Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0815 ATGGCTTGCTCAAACTTAACAATGTGGGTCTCTTCAAAACCTTCTCTTTCAGACGCCTCTTCCCTTTCCTTCCGTTCCTTCATCAACCCTCTTCCAAATCCCAACACCCCTTCTCCAGTTTTCACTTCACGGCCATCCACTGTCTCTCCCATTCAATGCGGTCTCCGTGAGCTTCGTGATCGAATTGATTCTGTGAAAAACACTCAGAAAATCACTGAAGCTATGAAGCTTGTTGCTGCCGCAAAAGTTCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTTTCAGAATCTCTCGTTGAAGTTCTCTACAATATCAATGAACAGCTTCAAACTGAAGATGTTGATGTTCCTTTAACAAAAGTCAGACCTGTAAAAAAAGTTGCTTTAGTTGTTGTTACAGGTGATCGTGGTCTCTGTGGTGGTTTCAACAATTACATCCTTAAAAAAGCAGAAGCAAGAATTGCAGAATTGAAGACTCTTGGTCTTGATTATGTTGTTATTAGTGTTGGAAAAAAGGGAAATACTTATTTCCTTCGTAGACCTTATATCCCTGTTGATAGATTTTTTGAAGGAAGTAATCTTCCAACAGCTAAAGAAGCTCAGGCAATTGCTGATGATGTTTTCTCTCTCTTTATCAGTGAGGAAGTTGATAAAGTTGAGCTTTTGTATACGAAGTTTGTGTCTTTGGTCAAATCTGATCCTGTGATTCATACACTTCTTCCACTTTCACCAAAAGGAGAGATTTGTGATATAAATGGTGTTTGTGTTGATGCTGCAGAAGATGAGTTTTTCAGGTTAACAACAAAAGAAGGGAAATTGACTGTGGAGAGAGATGTTATCAGGACAAAGACATCAGATTTCTCACCAATTTTGGAATTTGAGCAAGACCCAGTTCAGATTCTTGACGCTTTGTTACCTCTTTATTTGAATAGTCAAATTTTGAGGGCTTTACAGGAATCATTAGCTAGTGAGCTTGCAGCTAGAATGAGTGCCATGACTAATGCTACTGATAATGCATCAGAGTTGAAGAAGACATTGTCAAATATTTATAACAGACAACGTCAGGCCAAAATTACTGGTGAGATATTGGAGATTATTGCTGGTGCAGATGCTTTGGTCTAG 1128 39.01 MACSNLTMWVSSKPSLSDASSLSFRSFINPLPNPNTPSPVFTSRPSTVSPIQCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNYILKKAEARIAELKTLGLDYVVISVGKKGNTYFLRRPYIPVDRFFEGSNLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDVIRTKTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMTNATDNASELKKTLSNIYNRQRQAKITGEILEIIAGADALV 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36078959 36080086 - evm.model.ptg000014l.393 HCH14g0815 558718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0815 375 Hamap ATP synthase gamma chain [atpG]. 52 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 FunFam ATP synthase gamma chain, chloroplastic 122 245 - -
HCH14g0815 375 FunFam ATP synthase gamma chain, chloroplastic 53 120 - -
HCH14g0815 375 PRINTS ATP synthase gamma subunit signature 321 340 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 PRINTS ATP synthase gamma subunit signature 126 145 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 PRINTS ATP synthase gamma subunit signature 219 236 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 PRINTS ATP synthase gamma subunit signature 352 373 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 CDD F1-ATPase_gamma 55 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 FunFam ATP synthase gamma chain, chloroplastic 271 374 - -
HCH14g0815 375 NCBIfam ATP synthase F1 subunit gamma 54 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 54 374 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 Pfam ATP synthase 55 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
HCH14g0815 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 271 374 - -
HCH14g0815 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 53 122 - -
HCH14g0815 375 ProSitePatterns ATP synthase gamma subunit signature. 360 373 IPR023632 -
HCH14g0815 375 PANTHER ATP SYNTHASE GAMMA CHAIN 1 374 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
HCH14g0815 375 Gene3D - 123 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0815 HCH-Chr14:36078959 HCH6g0793 HCH-Chr6:42700077 7.00E-122 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0815 K02115 - csv:101214408 612.838