Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0831 ATGTTCGACCAAGATATTTTTGAGACACACCGTCATATGCTGCTGGATTTGGCATTTCAAACCTCAGAAAATGAGATGGAAAATGTTAGAGAGAGAGAGGATCATGATTTCGAGATTAAATCAGGAGCAGAAATTTTTGAAGCTACTGTTGGAATTGGAAGTGATCAAGATTCCTACCTCCGTTCTAAAAAGAAACGTTACAATCGTCATACTCAATGTCAAATCCAACAAATGGAAGCGTTTTTTAAGGAGTTTCCTCACCCAGATGATAAGCAGAGAATGGAGCTCAGCCGTGAGCTGGGTTTAGAACCCTTGCAAGTTAAGTTTTGGTTCCAAAACAAGCGTACGCAAATGAAGGCTCAACAAGAAAGACACGAGAATGCAATTTTGAAGGCCGAAAATGAAAGACTTCGTAGCGAGAATATTCGGTACAGGGAAGCACTCACTCATTCCGCATGTCCAAACTGCGGAACCTCGACTGCTCTCGGTGAAATGTCTTTTGACGACCAACATCTCCGTATTGAAAATTCTCGTTTGCGAGATCAGATTGAAAGAATGTCTGGATATGGCTCTAACTGCGTCACAAAGCCTCTCTCTTCTTCTTCTTCATCATATTATCACCTTCCATCAACTGCTTCTGCACCAGCTCGATCTCTTGACCTCGGCATGGCAAATTTTGGACAACAATCAGGCTTCGTTGGAGAAATGTATGGTGCTTCTGCTGCTGATTTTCTCAGGTCCGTTTCTAGGCCTTCAGAAGCCGATAAACCGATCATCGTCGAGCTCGCTGTTTCCGCAATGGAAGAATTAACAACTATGGCTCAAGCTGGAGAGCCCCTTTGGGTTCCACTTCAACCAGACAACAAGTCTAATGAGCTTATGCTTAATGAAACCGAGTATTTGACTTCTTTTTCAGCTGGGATTGCTCCTAAACCCTTGGGTTTAAGATCTGAAGCATCTCGAGTTTCCGCTATTGTTTTCATGAACCACATTAAACTTGTCGATATCTTCATGGATGCTACCCAATGGTCAACTGTGTTTTGTGGCATTGTTTCAAGAGCATCTACAGTAGAAATTCTGTCAGCTGGTGTCCCTGGAAACTTCAATGGGGCCTTGCATGTGATGAGTGCTGAATTTCAGGTCCCTTCACCGCTGGTTCCTACTCGTGAAAGTTACTTTGTGAGATACTGCAAACAGCACAGTGATGGAATATGGGCAGTTGCTGATGTTTCTCTTGATAGCCTGCGTCATTCTTCAATCCCTAAGACTCGAAGGAGGCCTTCTGGCTGTTTAATTCAAGAATTGCCTAATGGATACTCAAAGATTACTTGGGTGGAACATGTGGAAGTGGATGAAACTGGTGTGCCATCTATGTATAGACCACTGATTAGTTGTGGGCTTGCTTTTGGTGCAAAACGATGGGTGGCTACCTTAGATCGACAATGTGAACGTCTTGCTACTTCCTTGGCCACCACCATCCCTGCCGGAGATTTACGCCTGATATCAAGCATTGAAGGAAGGAAGAGTATGCTAAAGCTAGCAGAGAGGATGGTGACAAGCTTTTGTTCAGGCGTCGGTGCGTCAACCGCACACGCTTGGACGGCGTTACCCGCTGCCGGAAGTGATGATGTTAGGGTGGTGACAAGGAAGAGCACCGATGAACCCGGCAGACCTCCTGGCGTTGTGTTGAGCGCCGCCACTTCCTTTTGGATCCCTGTTCCACCCAAGAGAGTCTTCGATTTCCTTAGAAATGAAAAATCCCGTAGCGAGTGGGATATTCTATCAAATGGTGGCTTAGTTCAAGAAATGGCACACATAGCCAACGGCCGTCACGCTGGAAACTGCGTCAATTTACTACGTGTAAACAGTGCAAATTCAAGCCAAAGCAACATGCTAATACTACAAGAAAGCTGCACAGATTCCACAGGCTCATACGTTATCTATGCTCCTGTCGATACCGTGGCCATGAACGTCGTCCTAAGCGGTTGTGACCCTGATTACGTCGCGCTTCTTCCGTCAGGATTCGCTATACTTCCCGACGGGCCTACCGGAGCTCACGGCGGAGGGATACTTGAAGTTGGGTCTGGAGGCTCACTGATAACTGTTGCATTTCAAATTCTAGTTGATTCAGTCCCCACGGCTAGGCTTTCGGTTGGATCAGTTGCTACCGTTAATAGTCTAATTAAGTGCACGGTTGAGAGGATTAGAGCGGCGGTTATGCGTGAGATTAATCAAACATGA 2241 45.74 MFDQDIFETHRHMLLDLAFQTSENEMENVREREDHDFEIKSGAEIFEATVGIGSDQDSYLRSKKKRYNRHTQCQIQQMEAFFKEFPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQQERHENAILKAENERLRSENIRYREALTHSACPNCGTSTALGEMSFDDQHLRIENSRLRDQIERMSGYGSNCVTKPLSSSSSSYYHLPSTASAPARSLDLGMANFGQQSGFVGEMYGASAADFLRSVSRPSEADKPIIVELAVSAMEELTTMAQAGEPLWVPLQPDNKSNELMLNETEYLTSFSAGIAPKPLGLRSEASRVSAIVFMNHIKLVDIFMDATQWSTVFCGIVSRASTVEILSAGVPGNFNGALHVMSAEFQVPSPLVPTRESYFVRYCKQHSDGIWAVADVSLDSLRHSSIPKTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPSMYRPLISCGLAFGAKRWVATLDRQCERLATSLATTIPAGDLRLISSIEGRKSMLKLAERMVTSFCSGVGASTAHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKRVFDFLRNEKSRSEWDILSNGGLVQEMAHIANGRHAGNCVNLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPTGAHGGGILEVGSGGSLITVAFQILVDSVPTARLSVGSVATVNSLIKCTVERIRAAVMREINQT 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36215430 36220585 - evm.model.ptg000014l.377 HCH14g0831 558734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0831 746 CDD homeodomain 63 122 IPR001356 GO:0003677(InterPro)
HCH14g0831 746 Pfam START domain 262 484 IPR002913 GO:0008289(InterPro)
HCH14g0831 746 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
HCH14g0831 746 Gene3D - 318 476 IPR023393 -
HCH14g0831 746 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 739 IPR042160 -
HCH14g0831 746 SUPERFAMILY Homeodomain-like 54 122 IPR009057 -
HCH14g0831 746 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH14g0831 746 Gene3D - 53 137 - -
HCH14g0831 746 FunFam Homeobox-leucine zipper protein HDG1 52 137 - -
HCH14g0831 746 SMART HOX_1 62 125 IPR001356 GO:0003677(InterPro)
HCH14g0831 746 Pfam Homeodomain 64 119 IPR001356 GO:0003677(InterPro)
HCH14g0831 746 Coils Coil 113 147 - -
HCH14g0831 746 SUPERFAMILY Bet v1-like 506 736 - -
HCH14g0831 746 ProSiteProfiles START domain profile. 252 487 IPR002913 GO:0008289(InterPro)
HCH14g0831 746 FunFam Homeobox-leucine zipper protein GLABRA 2 261 483 - -
HCH14g0831 746 SUPERFAMILY Bet v1-like 254 485 - -
HCH14g0831 746 CDD START_ArGLABRA2_like 256 483 - -
HCH14g0831 746 SMART START_1 261 484 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0831 HCH-Chr14:36215430 HCH7g1594 HCH-Chr7:48243759 3.00E-177 dispersed
HCH14g0831 HCH-Chr14:36215430 HCH2g0744 HCH-Chr2:51109525 2.00E-269 wgd
HCH14g0831 HCH-Chr14:36215430 HCH3g0555 HCH-Chr3:3697787 4.00E-278 wgd
HCH14g0831 HCH-Chr14:36215430 HCH7g0229 HCH-Chr7:1529625 4.00E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32972 PF01852 START 7.20E-51 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0831 K09338 - csv:101209093 1165.98