Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0833 ATGGCTGCTAATCAACAACTCCTTCTTCAACCTTCCAAACCTAATTCTCACTTCAAAACCCTCACCATTATTCTCTGTTTGTCTGCTACAATCATCTTCTCAGCCTCCATTGTTTCCAATCATTTCTTCAAATTCAGACCAAACCCATCTCAAAACAATCACTCTTTCCTTCATAACATCTGTGAAAAAGCTTATAATCCATCATCATGCATCGCCATGGCCTCACAAGTTTACTTTAACAAATCATTCAACAACAACAACGTTCATTTCTTGGGAACTTTCTTGAGAAAATCCACAGCTAAAGTGATGAATTCAATCGAAGCTGCTAATGATCTCAGCCGTAGAACCAACGACATCCACGGTCAAGCAACTTTAGCTGATTGTGTAGAGCTTCTCGAGATTTCCATGGATAGAATAATGGACTCGATCTTGGTTTTACAGAAGAAAACGAGTGGTTCCATTGAAGATGTTCAAACGTGGCTGAGTAGTGTTCTCACGAATCATGTCACGTGCTTTGATGAGCTAGAGGGCTCGGTTTCTACGAAGCTAGGGCTCGAGGAGTTGATAATGAGAGCGAGAAATTCTCTAGCCATGCTTGTTTCCATTTCTCCATCAAAAGAGATGGAGTTTTTGGAAATGGAATTCCCGGTTTGGTTAAAGAGTAGAGATAGAAGGCTTTTGGGAGTTGTGGGGAAGGAAATAAAAGCTGATATTGTGGTGGCGAAGGATGGGAGTGGGAATTTCAAGACGGTGAAAGAAGCAGTTGAGGCGGTGTCTGATAAGAGTAAAAGAAGATTTGTTATATATGTGAAGAAGGGGATTTATGAGGAGAATGTGGAAGTGGGAAAGAAGAAGAAGAATCTGATGATTGTTGGAGATGGAATGGATTCCACAGTTATTACTGGGAGCCTTAATGTTGTTGATGGATCTACAACTTTCAAGTCTGCAACTTTAGCTGCGGTCGGAGACGGATTTATAGCCCAAGATATATGGTTCAAAAACACCGCCGGACCGCAAAAGCACCAAGCGGTGGCACTCCGTGTCGGAGCCGATCAAGCAGTCATCAACCGCTGTCGTATTGATGCTTTCCAAGACTCTCTCTACTCCCATTCCAACCGGCAATTCTACCGTGATTCCACCATTACCGGCACCGTAGACTTCATATTTGGTAACGCCGCCGTCGTGTTGCAAAACTGTAAAATAGAAGCCCGTCGGCCCATGGACAATCAGAAAAATATGGTAACGGCCCAAGGACGAATTGACCCAAATCAAAACACCGGGACTTCGTTCCAAAATTGCCAAATCATTGCAAGCTCCGACCTCGAGCCCGTTAAAAAGTCCATTAAGACATATTTGGGCCGGCCATGGAAAGAATATTCCAGGACTGTGTTTATGCAGTCCAAAATTGGCGATGTAATAGATCCAGTGGGCTGGGCGGAATGGAATGGGGATTTTGCACTCAAGACTTTGTATTATGGTGAGTATTTAAATACTGGGCCTGGTGCTGACGTTAGCAAGCGAGTGAAATGGCCCGGTTATCGTGTCATTAAAAGCCCATCTGAAGCCCAAAAGTTCACTGTGGCTGCGTTGATACAAGGAGGTGAGTGGCTGGGCCCCACCGGAGTGACTTTTGTGGAAGGGCTGTGA 1647 44.26 MAANQQLLLQPSKPNSHFKTLTIILCLSATIIFSASIVSNHFFKFRPNPSQNNHSFLHNICEKAYNPSSCIAMASQVYFNKSFNNNNVHFLGTFLRKSTAKVMNSIEAANDLSRRTNDIHGQATLADCVELLEISMDRIMDSILVLQKKTSGSIEDVQTWLSSVLTNHVTCFDELEGSVSTKLGLEELIMRARNSLAMLVSISPSKEMEFLEMEFPVWLKSRDRRLLGVVGKEIKADIVVAKDGSGNFKTVKEAVEAVSDKSKRRFVIYVKKGIYEENVEVGKKKKNLMIVGDGMDSTVITGSLNVVDGSTTFKSATLAAVGDGFIAQDIWFKNTAGPQKHQAVALRVGADQAVINRCRIDAFQDSLYSHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEARRPMDNQKNMVTAQGRIDPNQNTGTSFQNCQIIASSDLEPVKKSIKTYLGRPWKEYSRTVFMQSKIGDVIDPVGWAEWNGDFALKTLYYGEYLNTGPGADVSKRVKWPGYRVIKSPSEAQKFTVAALIQGGEWLGPTGVTFVEGL 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36237854 36240235 - evm.model.ptg000014l.375 HCH14g0833 558736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0833 548 Gene3D - 231 548 IPR012334 -
HCH14g0833 548 FunFam Pectinesterase 231 548 - -
HCH14g0833 548 NCBIfam pectinesterase inhibitor domain 31 179 IPR006501 GO:0004857(InterPro)
HCH14g0833 548 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
HCH14g0833 548 PANTHER PECTINESTERASE 24 538 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH14g0833 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 205 IPR035513 -
HCH14g0833 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 178 IPR035513 -
HCH14g0833 548 SMART PMEI_2 52 198 IPR006501 GO:0004857(InterPro)
HCH14g0833 548 Pfam Pectinesterase 237 533 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH14g0833 548 CDD PMEI-like_4 66 203 - -
HCH14g0833 548 Pfam Plant invertase/pectin methylesterase inhibitor 56 198 IPR006501 GO:0004857(InterPro)
HCH14g0833 548 SUPERFAMILY Pectin lyase-like 235 547 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0833 HCH-Chr14:36237854 HCH4g1042 HCH-Chr4:6698670 6.80E-126 dispersed
HCH14g0833 HCH-Chr14:36237854 HCH11g1124 HCH-Chr11:42991513 3.10E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0833 K01051 - csv:101216377 781.941