Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0857 ATGGCATCTCTCACTCCTTGTCCCGACGATTTCAAATGTCCAATTTCTCTCGAAATAATGTCCGACCCGGTTATTCTCCAATCGGGTCACACCTTTGACCGTTCCTCCATCCAACGGTGGTTAAACTCCGGCCACCGTTCTTGTCCAATTACCCAATTGCCCCTCCCTGATAACCCTTCCCTTATTCCTAACCATGCCCTCCGTAGCTTAATTTCCAATTTTACCCTCATCTCCCTTTCTAAACCCCTCTCAGCCGTTTCTCCGACGACGACGCCGCAAACCCTAATTTCAGTCATAACTTCTCCTTCTTCCTCCTTCGATTCCAAAATCGATTGTCTTAACCAGCTCGCACGTGTCTCCAAACGTGATTCTGGTATTCGTCGGAAATTGACCGAGTCTGGAGCTGTCTCCGCGGTTCTTAAATGTGTCGGTTCTGACGATCCTACCCTTCAAGAAAAAGCTCTTTCTTTGTTACTGAATCTTAGTTTGGATGATGATAATAAAGTTGGGTTGGTTGCTGAAGGTGCTATTGGTCTCACTGTGGCGGCTTTGCAAAGCCGGTCACCGGATTGTAGAGCCGTTGCGGCGACGATGTTAACGAGCTTGGCTGTTGTCGAGGTTAACAAGGCCACAATTGGGGCGTATCCGAATGCTATTCGGTCATTGGTTGGCCTTCTTCGGAACGGTAATGGCCGTGAGAAGAAAGAGGCAGCGACCGCGCTTTACGCGATTTGTTCGTTTCCGGGCAATCGTGTTCGGGCTGTGGAATGTGGGGTTGTGCCCATTTTGATTAAAATTGTGAATTCAGGGCTTGATAGGGCTGTTGAGGTTCTTGGGATTTTAGCTAAGTGTAAGGAAGGTCGAGAGGAGATTCGTCGGTTTAATGGAATTGTGCAGGTGTTGGGATGTGTTTTGAGGAATGGAAGTTCAAGAGGGGTTCAATATGCACTTTTGACTCTAAGTTCACTGTGTTGTTACTGTGAGAGAATGTGTGTTGAAGCTAGGAGAGAAGGGGTTTTGGAAATTTGTGTGGCGTTGATTGATGATGATAATGAGAAGATTAGAGTAAATGCTGCGAATTTGATTCGTGTACTGCGTGGAAATAACTCGTAA 1113 46.72 MASLTPCPDDFKCPISLEIMSDPVILQSGHTFDRSSIQRWLNSGHRSCPITQLPLPDNPSLIPNHALRSLISNFTLISLSKPLSAVSPTTTPQTLISVITSPSSSFDSKIDCLNQLARVSKRDSGIRRKLTESGAVSAVLKCVGSDDPTLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQSRSPDCRAVAATMLTSLAVVEVNKATIGAYPNAIRSLVGLLRNGNGREKKEAATALYAICSFPGNRVRAVECGVVPILIKIVNSGLDRAVEVLGILAKCKEGREEIRRFNGIVQVLGCVLRNGSSRGVQYALLTLSSLCCYCERMCVEARREGVLEICVALIDDDNEKIRVNAANLIRVLRGNNS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36378984 36380096 - evm.model.ptg000014l.351 HCH14g0857 558760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0857 370 SMART Ubox_2 10 74 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH14g0857 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 134 176 IPR000225 GO:0005515(InterPro)
HCH14g0857 370 ProSiteProfiles U-box domain profile. 6 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH14g0857 370 SUPERFAMILY RING/U-box 5 75 - -
HCH14g0857 370 Gene3D - 88 212 IPR011989 -
HCH14g0857 370 CDD RING-Ubox_PUB 8 57 IPR045210 -
HCH14g0857 370 SMART arm_5 164 204 IPR000225 GO:0005515(InterPro)
HCH14g0857 370 SMART arm_5 327 367 IPR000225 GO:0005515(InterPro)
HCH14g0857 370 SMART arm_5 208 246 IPR000225 GO:0005515(InterPro)
HCH14g0857 370 SMART arm_5 284 325 IPR000225 GO:0005515(InterPro)
HCH14g0857 370 SMART arm_5 123 163 IPR000225 GO:0005515(InterPro)
HCH14g0857 370 Gene3D - 213 274 IPR011989 -
HCH14g0857 370 Gene3D - 275 370 IPR011989 -
HCH14g0857 370 Pfam U-box domain 8 75 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH14g0857 370 SUPERFAMILY ARM repeat 93 365 IPR016024 -
HCH14g0857 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
HCH14g0857 370 FunFam RING-type E3 ubiquitin transferase 6 77 - -
HCH14g0857 370 PANTHER U BOX DOMAIN-CONTAINING 8 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0349 HCH-Chr12:1997855 HCH14g0857 HCH-Chr14:36378984 2.30E-09 dispersed
HCH14g0857 HCH-Chr14:36378984 HCH9g0828 HCH-Chr9:5823482 3.50E-33 dispersed
HCH14g0857 HCH-Chr14:36378984 HCH3g0327 HCH-Chr3:2070976 1.50E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0857 K27970 - csv:101213883 582.022