Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0886 ATGGGTCCTGCAAATTGGACCTTCTACTTGTGGATCCTTGTTGGATTGCTGTTGGTCTCCTTGAAGTCTTTTAGTTTCGGAGACACCGATATTCGTGATGTCATTGCAACCAATGCATTATTTATTTCTCTTGGCTACCCTCCTCTGCGAGGGTGGATTCTTGTCGGAGGTGATCCGTGTGGGGAGAAGTGGCAAGGGATTGAATGCGTGTTCTCAAATATAACAGCAATACAACTAAGTGGCTTGAATTTGGGAGGAGAGCTCGGCAACAACTTGGCACTATTTGAATCGATTATATCTATTGATCTTAGCAACAACCATATTGGAGGGAACATTCCGTCAATATTGCCCACGACACTAAGAAATTTTTCTTTATCGACTAATCAATTCACTGGAAGCATTCCAGCTGCATTGTCCTCATTAACACAACTAGTAGACTTGTCATTAAACGACAACCTTCTTACTGGAGTAATACCTGATGCCTTTCAGCAGCTTAATGGCTTAAATAACTTGGACCTTTCTGGCAACCGTTTGAGTGGCCAGCTGCCTCCTTCGGTGGCTGCTTTGTTCTTTCTTACTACATTGCACTTGCAGAACAATCAACTTTCCGGGATGCTTGATGTTCTACAGGATCTTCCACTGTTTGATTTGAATATAGAGAACAATCTTTTTTCTGGACCTATACCTGCAAAGTTATTGAATATTCCAAATTTCAGAAAAGATGGGAATCCTTTTAATACTACCATAATTCCATCTGCTCCTACTTTAGCCCCTTCACCTTTTGCTGTGGCCCCAATTACTATGGAAAAACCAGACAAACAGGCAAATGGACCAACTACTTCAGAAACTGCCAAATCAGATGGAGCAAGGAGCTTTTTTACTGCTAAGCGGGTCACTTGGATTGCAATTATTGGGGTTATAATATTAATTGCATTGTTATTTTGTCTTATTATGTCAATCTGCCTGAAAAGAAATAAACATCGAGAAGACACCAAGATGGTTCATGATGGTGCTGATATGGCTTATAAATATAAGCCTAAATCCAGACAGTCCTCACCTAAAATGAATAATGACATTGAGAATGCTCAAAAGGAAAGCGTTCTTAAGCCAAGGCTACATGATAGACAGGAGACAGATGGGAAGAGACAAGGTACTTTTAGTATGACATCTAATAAAGACCATGGAAAGGGGATTATAGATGTGAGCACAAATAGTTTCACAGCACCGCGTCCTCCCCCTCCCCTTCCTCTCCTTTCAACTGAGGAGATTATAAAACCTATCGCCGCAGCTGAAATATCTAGCAAATTGCCTGCTAGAAAATTGAATTCAAGCTCTTTGAAAGTTTTCACAGTTGCATCACTTCAGCAGTACACAAATAGTTTCTCTGAAGATAGTCTTCTTGGAACCGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAGATGGAAGGCTGCTGGCTGTTAAAAAACTGGCAAGCACCTCTTTGATGCAACAGAGTGATGATGAATTTCATGACCTTGTAACTAATATCTGTAAATTTCGCCATGATAATATTTTGGAGCTTGTGGGTTACTGTGTTGAGCATGGACAGCGTTTACTCGTATATAAGTATTGTAAAAATGGTACACTTTATGATGCACTGCATATGGACGAGGAGATGCATCAAAAGCTTTCATGGAATTTGCGAATCAAGATTGCACTTCAAGCTGCAAGAGCTTTAGAGTATCTGCATGAGGCTTGTCAGCCACCTATCATGCACCAAAATTTCAAGTCTGCCAATATTCTCTTAGACAGTGAGCTAAACGTGCATGTCTCTGACTCTGGCCTCACTTCGCTGCTTTTATCTGGTTCTGCAAATCAGTTGTCCGTGCGCCACCTCACGGCTCATGGTTATAGCCCTCCCGAATTTGAGTCAGGAACTTACACTTATCAAAGTGATATTTATAGCTTTGGAGTTGTAATGTTAGAACTCCTCACTGGGCGGAAGTCGTGTGACCGATCACGACCTCGAGGAGAGCAATTTCTTGTTAGATGGGCTGTTCCACGGCTCCATGATATCGATGCATTATCAAGAATGGTGGATCCATCTCTTAATGGCTTGTATCCTATCAAGTCATTATCACGCTTTGCCGATATAGTTTCTGCATGCATACTGCGAGAGCCAGAATTTAGGCCACCAATCTCTGAAATTGTACAGGAGCTCTTACAAATGCTTTAA 2220 41.53 MGPANWTFYLWILVGLLLVSLKSFSFGDTDIRDVIATNALFISLGYPPLRGWILVGGDPCGEKWQGIECVFSNITAIQLSGLNLGGELGNNLALFESIISIDLSNNHIGGNIPSILPTTLRNFSLSTNQFTGSIPAALSSLTQLVDLSLNDNLLTGVIPDAFQQLNGLNNLDLSGNRLSGQLPPSVAALFFLTTLHLQNNQLSGMLDVLQDLPLFDLNIENNLFSGPIPAKLLNIPNFRKDGNPFNTTIIPSAPTLAPSPFAVAPITMEKPDKQANGPTTSETAKSDGARSFFTAKRVTWIAIIGVIILIALLFCLIMSICLKRNKHREDTKMVHDGADMAYKYKPKSRQSSPKMNNDIENAQKESVLKPRLHDRQETDGKRQGTFSMTSNKDHGKGIIDVSTNSFTAPRPPPPLPLLSTEEIIKPIAAAEISSKLPARKLNSSSLKVFTVASLQQYTNSFSEDSLLGTGMLGSVYRAELPDGRLLAVKKLASTSLMQQSDDEFHDLVTNICKFRHDNILELVGYCVEHGQRLLVYKYCKNGTLYDALHMDEEMHQKLSWNLRIKIALQAARALEYLHEACQPPIMHQNFKSANILLDSELNVHVSDSGLTSLLLSGSANQLSVRHLTAHGYSPPEFESGTYTYQSDIYSFGVVMLELLTGRKSCDRSRPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGLYPIKSLSRFADIVSACILREPEFRPPISEIVQELLQML 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36578168 36582743 - evm.model.ptg000014l.322 HCH14g0886 558789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0886 739 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
HCH14g0886 739 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 428 538 - -
HCH14g0886 739 MobiDBLite consensus disorder prediction 364 381 - -
HCH14g0886 739 Gene3D Phosphorylase Kinase; domain 1 425 538 - -
HCH14g0886 739 SUPERFAMILY Protein kinase-like (PK-like) 440 735 IPR011009 -
HCH14g0886 739 PANTHER LEUCINE RICH REPEAT KINASE 2 71 737 IPR051420 -
HCH14g0886 739 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
HCH14g0886 739 Gene3D Ribonuclease Inhibitor 43 256 IPR032675 -
HCH14g0886 739 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 539 739 - -
HCH14g0886 739 MobiDBLite consensus disorder prediction 363 389 - -
HCH14g0886 739 Pfam Protein tyrosine and serine/threonine kinase 465 735 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0886 739 Gene3D Transferase(Phosphotransferase) domain 1 539 739 - -
HCH14g0886 739 SUPERFAMILY L domain-like 41 238 - -
HCH14g0886 739 ProSiteProfiles Protein kinase domain profile. 461 739 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0886 739 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0886 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0886 HCH-Chr14:36578168 HCH6g0029 HCH-Chr6:457729 1.10E-121 dispersed
HCH14g0886 HCH-Chr14:36578168 HCH7g0172 HCH-Chr7:1136776 1.10E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH4g1561 . 386 688 Strubbelig Receptor Gene Family AT1G11130 51.8 9.6e-85 311.6
HCH3g0962 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 3.7e-84 309.7
HCH6g0029 . 409 697 Strubbelig Receptor Gene Family AT1G11130 51.9 6.9e-83 305.4
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH6g0029 . 1 726 Strubbelig Receptor Gene Family AT1G53730 60.2 2.0e-210 729.2
HCH4g1561 . 1 701 Strubbelig Receptor Gene Family AT1G53730 63.4 8.2e-196 680.6
HCH3g0962 . 24 701 Strubbelig Receptor Gene Family AT1G53730 53.5 8.9e-150 527.7
HCH6g0029 . 11 720 Strubbelig Receptor Gene Family AT3G14350 53.4 1.0e-190 663.7
HCH4g1561 . 6 699 Strubbelig Receptor Gene Family AT3G14350 57.0 3.6e-172 602.1
HCH3g0962 . 234 708 Strubbelig Receptor Gene Family AT4G22130 69.4 5.7e-176 614.4
HCH4g1561 . 394 707 Strubbelig Receptor Gene Family AT4G22130 66.8 5.4e-118 421.8
HCH6g0029 . 388 716 Strubbelig Receptor Gene Family AT4G22130 62.5 1.3e-116 417.2
HCH7g0172 . 480 788 Strubbelig Receptor Gene Family AT4G22130 60.8 8.6e-108 387.9
HCH14g0886 . 415 739 Strubbelig Receptor Gene Family AT4G22130 53.9 3.0e-100 362.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81249 PF07714 PK_Tyr_Ser-Thr 3.70E-37 CL0016 HCH PK