Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0941 ATGGAAGAAGTAGGTTCTGCTGCTGCTTCAGATGGGGAGAATCATAATCAGATTAATGATAATATTAACAAAATTAGTAACTCAAGTGAAGGTCTTAGCAAACCTAAGCGTCAGATGAAGACTCCGTTTCAGCTTGAAACCCTAGAGAAAGCCTATGCTTCGGAGACATACCCGTCTGAATCGACGAGGGCTGAGTTATCGGAGAAATTGGGGCTTTCTGATCGGCAATTACAAATGTGGTTTTGTCATAGAAGGTTGAAAGATAAGAAAGAACCGGTTAAGAAACCGCGGAAGATGGTGGCACCAACTTTGCCTGATTCTCCCGTTGATGAATTGAGAGTGGTGGCTGAGCCGGGTAGTGATTACGGGTCTGGGTCTGGGTCGGGTTCGAGCCCGTTTGGTGATGTCGGGCGTAATGTGATGCCTAGAACTGTTGGAGATGATGTGCCAATGATGAGAAGGTATTATGAGCCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAATCTCAATTAGGAGAGCCATTGAGGGAGGATGGACCTATTCTTGGGATTGAATTTGATTCATTGCCACCTGATGCCTTTGGAGCTCCTATAGCGGCAGAACAGCAGAAGCGGTCTGGACATTTGTATGGAGACAAATACGAACAACGTGATACAAAATCAAATAAAGCTACCCCAAGGGCATTTCCTGAATATCCATTTTTTCCAGACCAGTCTAATGTTAGAACTGATGTTTATGGATCAGTTGCCCAATCACATTATCCAGATCCATTAGTTGAGGTTTCAGCAGCCAGGACACCGCCATTCTTATTGGGTCATGAACAATTGAACAGGGGTCATAATTACCATGGTCAGGTCTCAAGGGTTCGTCTTTCGTCTCAACAAGAGAAGCAGGCAGTTGCAATTCCATCACCCGCTGAAGATAACGAATTTGTCCCTGCAAGGGATGCTTTCGCAAATATACGAATGAACGCTCAATTAGATCACACAGTTGTTGGGCCAGAAAATTCTTATGTATTTTCTGATGGGCACATCTTTCCTAATGAAGCCATCGTGAGGTTGGAAAGGAAACGCAAGAGTGAAGACACTCGCATTGCCAAAGAAGTTGAGGTCAATGAGATACGAATTCGAAAAGAGCTTGAGAAACAAGATATTATGAGGAGAAAGAGTGAAGAGCGAATGAAGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAAGAAAGAAGAGGAAAAGTTGGTGCGTGAAAGGCAGCGGGAAGCAGAGAGATTGAAGCGTGAGGAAAGACGTGAACTTGAACGTAAGGAGAAGTTTTTGCAGAAGGAATATTTGAGGGCAGAGAAGAGGATGCAAAAAGAAGCAATTCGCAAAGAGAAGGAAGCAGTAAGACGCAAAGCTGCAATGGAGAAGGCTACTGCTCGTAGAATTGCTCGTGAGTCTATGGAGCTTATTGATGATGAACAGCTGGAATTGATGGAACTGGCTGCTGTAAAAAAAGGATTATCCTCAACAATAAGTCTTGATCTTGACACTTTGCAGAATCTTGAATCATTCAGAGATTTTCTAGGTGCATTCCCACCCAAATCTGTGCAATTGAAAAAACCCTTTAGCATTCAACCTTGGATCAATTCAGAGGAGAACATTGGAAACCTCCTTATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTCTGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGATTATGATTCAAGGTTGTTGTGTGAGATTCACATTTGTCTTCTGAGACTGATTATTAAAGATATTGAAGATGTTGCAAGAACACCTTCTTCTGGCTTAGGAATGAATCAGAATGGTGTTGCCAATGCTGGAGGTGGACATCCACAGATCGTTGAAGGGGCATATGCATGGGGGTTTGACATTCGCAACTGGCAGCAACTTTTAAATCCTTTAACTTGGCCTGAAATATTTCGACAACTGGCACTATCAGCTGGATTTGGACCACAGTTGAAGAAAAGGAGTGTGGCATGGCCTGACTTGCATAGTAATGATGAGGGTAAATGTGGTGAGGATATAGTATCTACTCTTCGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTATTGGCTCCACGAAGATCTAGGCATCGGCTGACTCCTGGAACTGTCAAGTTTGCCGCTTTTCATGTTCTTTCATTAGAAGGAAGTGATGGGTTAACAGTTCTTGAACTTGCAGAGAAGATTCAGAGATCTGGACTTAGAGATCTCACTACAAGTAAAACACCAGAGGCTTCCATTTCTGTTGCTTTGACGAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGTGTGCGAACTCCCTATAGGAAGGATCCTGATGATGCTGAGGAAATACTTTCAGTAGCCAGGAAAAAAATTCAGATATTTCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTCGATGAAGATCCGGAGGTTGATGATGTAGCTACCACATCTTTGGTGAATGACGATGTTAATAAAGGAGGTGCTAGATTAGGAGTTGAGAATGAAAACTTATGCCATGATACTGCTGTAAAACCACAAAATGAAGTTGGCAAAGTTCTGTCATCCTTCCCTCTAAGTGGCTCAAAGGACACAAAATATTCAGATATTCCTACGGAGGAATATCGTGTTGTTAATGAGACTGCTATTAGTGATCTTGATCAAGAAAACATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTCAGTGTTGAGGAACGCCTGAATGCCCTTGTTGTCTTAACCGGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGACCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGGCAGAGGCTCAGATTGATAAAACTCGCCTAAAAGAAGAGATCATAACTAAAACAGATTTTCCAATTCACATGGGAATCAAGGGTGAAATTGAACTTAATGGTTCTGCTATGGAGGGTGGTCAAAGCCCATTACCGGTTGTTGACAATAGGAACAATGAGGCAACACCAAGCACTACAGAAAACCATAGTAGTGTGCCTAATGAAAGGGCTTCTTTAGTGCCAGACTTTTTCTCTGGCCCAGATAATTTCTTGTCTCAGCAGTATGGACATGCTTCAAAGAGGTCACGCTCACAGTTAAAATCTTATATTGCCCACAAAGCTGAAGAGATGTACACATACAGGTCCTTGCCTCTTGGTCGTGATCGTAGGCGTAATCGTTACTGGCAATTTGTTGCAGCTGCTTCAAGCAATGATCCTGGTTCTGGGAGGATCTTTGTTGAAATGTATGATGGAAAATGGAGGCTTATTGATTCCGAAGAGGGCTTTGATGCTCTTTCAATGTCTTTGGACACACGTGGGATTAGAGAATCACACCTGCGCATGATGTTGCAAATGATAGAGACGACCTTCAAGGAAAATGTTAGGAGAAATTTGCAGTGTGTCAATGTCATGGTTCAAAGTGGAATGACCCTTAAACATGAAACTGGTGAATTGAATTCTAGTCCTGAATGCACTGCTGGATTAAACAGTCCCAGCAGTACCATTTGTGGTTCACATTCGGATACAACGGTAACATCACATTCATTTAGAATTGAGCTTGGGAGAAATGAAAGTGAAAAGAAGGCTGCATTTAAAAGATATCAAGACTTGCAAAAGTGGATATTGAAAGAGTGCTTTAACTCATCGACATTCTGTGCCATGAAATTTGGGAAAAAGAGGTGCACACAGCTATTGGACATTTGTGATTCATGTCTGTGTTTGTTTATTTCTGAACATTCTCACTGCTCTTCATGCCATCAAACTTTTGGCACCAGTGGGAGTGATTTTAATTTTTTTGAACACACACATCAATGTGAAAAGGAACGGAAGTTTAACCGTTGGGATATCCACGCTTTAGATGCATCTCTTCCCCTCAAAAATAGATTGCTCAAAGCCATCCTTGCTTTCATTGAGGCTCATATTGCATCGGAAGCTCTTCAATCATTTTGGACAGAAGAATATCGTAAATGTTGGGGTGTCAAATTGAACATGTCATCATCCATTGTGGAGCTTATACAGATATTGACCCTGTTTGAGAGTGTAATTAAGCGAGATTTTCTGAAATCAGAATTTACTACGACAGAGGAACTTCTCAGCTCGTGTTCTCTTACTGGGAATGTTTTACGTGATCCAGCAGACGTCAGTTCTATCCTTATATTACCTTGGATTCCACGAACAATTCCAGCTGTTGCTCTGAGGCTCTTTGAGCTGGATGCATCCATTTTTTATATTGGGTGCAAGAAACCCGAACCTGACCAGGATAAGGAAATTGGAGAATATACAAACTGTCAGAGTAGGTTTGTTCATGTCAAGAATGATGAGCAGGTCAGACTAAATGATCTTGATTATGACGATTCGATGAAAAGGGAAATTTCAGCTGATCCAAAAAACTTAAGAAAAAGCAACAAACGTGGTCGAGGAAGTCGTGAACAAGGTCATCGTAAGCGGTGGCAGAAAAAAGTTAATGGTTCCAAATCTGATAGTGTCCGGCAAAATCCTAAGAGTAGTGAGAAAATAAAGCAAGGACCGAGACAATTGGGACAAGGAACACAGGTGCTGGGTTTACGGGGCCCCCGTACGGTTAGGAAGAGGAGGGCAGAGACGAGCATTCCAGATGAAACACTGTTTAGTCGAGGGCCTGGCAGTAGTCATCAGACTCGAGATGAGTCTCCAAAAATGTTTATTTCTGAATGGGATGATGAAAAGATGGATAGGTTGGATATGGAAGATGAAGAGAATATTAACAACACAGAACCAATGGACTACTCTGATGATGAAGTTGAGGCAGGGAGGTACGAGCAAGGGAATTGGGAATTTGGTTTTGAGGGCTCATCCAATAGATGGAATGGCGATATAGGGATAGCGAGTGACGAGGATGTAGATTTGTCTGAGGACTATAATGGCACTGAAGAGGTCGGGAATGATGATTTGGAGTTGGATGTGGATACGAGTGAGGAGTCGGATGATTCAGGAAATAGATTAGGAAACAATGAAGGTGGAGAAGAATCTGCTGTCTCAGACGATTATAGTGATTAA 5220 41.99 MEEVGSAAASDGENHNQINDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEPVKKPRKMVAPTLPDSPVDELRVVAEPGSDYGSGSGSGSSPFGDVGRNVMPRTVGDDVPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDSLPPDAFGAPIAAEQQKRSGHLYGDKYEQRDTKSNKATPRAFPEYPFFPDQSNVRTDVYGSVAQSHYPDPLVEVSAARTPPFLLGHEQLNRGHNYHGQVSRVRLSSQQEKQAVAIPSPAEDNEFVPARDAFANIRMNAQLDHTVVGPENSYVFSDGHIFPNEAIVRLERKRKSEDTRIAKEVEVNEIRIRKELEKQDIMRRKSEERMKKEMEKQDRERKKEEEKLVRERQREAERLKREERRELERKEKFLQKEYLRAEKRMQKEAIRKEKEAVRRKAAMEKATARRIARESMELIDDEQLELMELAAVKKGLSSTISLDLDTLQNLESFRDFLGAFPPKSVQLKKPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLCEIHICLLRLIIKDIEDVARTPSSGLGMNQNGVANAGGGHPQIVEGAYAWGFDIRNWQQLLNPLTWPEIFRQLALSAGFGPQLKKRSVAWPDLHSNDEGKCGEDIVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSDGLTVLELAEKIQRSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRTPYRKDPDDAEEILSVARKKIQIFQNGFLAGEDADDVERDEESECDDVDEDPEVDDVATTSLVNDDVNKGGARLGVENENLCHDTAVKPQNEVGKVLSSFPLSGSKDTKYSDIPTEEYRVVNETAISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALVVLTGIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKTRLKEEIITKTDFPIHMGIKGEIELNGSAMEGGQSPLPVVDNRNNEATPSTTENHSSVPNERASLVPDFFSGPDNFLSQQYGHASKRSRSQLKSYIAHKAEEMYTYRSLPLGRDRRRNRYWQFVAAASSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSMSLDTRGIRESHLRMMLQMIETTFKENVRRNLQCVNVMVQSGMTLKHETGELNSSPECTAGLNSPSSTICGSHSDTTVTSHSFRIELGRNESEKKAAFKRYQDLQKWILKECFNSSTFCAMKFGKKRCTQLLDICDSCLCLFISEHSHCSSCHQTFGTSGSDFNFFEHTHQCEKERKFNRWDIHALDASLPLKNRLLKAILAFIEAHIASEALQSFWTEEYRKCWGVKLNMSSSIVELIQILTLFESVIKRDFLKSEFTTTEELLSSCSLTGNVLRDPADVSSILILPWIPRTIPAVALRLFELDASIFYIGCKKPEPDQDKEIGEYTNCQSRFVHVKNDEQVRLNDLDYDDSMKREISADPKNLRKSNKRGRGSREQGHRKRWQKKVNGSKSDSVRQNPKSSEKIKQGPRQLGQGTQVLGLRGPRTVRKRRAETSIPDETLFSRGPGSSHQTRDESPKMFISEWDDEKMDRLDMEDEENINNTEPMDYSDDEVEAGRYEQGNWEFGFEGSSNRWNGDIGIASDEDVDLSEDYNGTEEVGNDDLELDVDTSEESDDSGNRLGNNEGGEESAVSDDYSD 1739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36953607 36963355 - evm.model.ptg000014l.267 HCH14g0941 558844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0941 1739 SUPERFAMILY Homeodomain-like 25 91 IPR009057 -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1 43 - -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1552 1576 - -
HCH14g0941 1739 Coils Coil 988 1008 - -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 10 35 - -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1515 1533 - -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1685 1713 - -
HCH14g0941 1739 SMART HOX_1 33 95 IPR001356 GO:0003677(InterPro)
HCH14g0941 1739 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 937 980 IPR028942 -
HCH14g0941 1739 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 14 1739 IPR044977 GO:0006357(InterPro)
HCH14g0941 1739 Pfam DDT domain 549 604 IPR018501 -
HCH14g0941 1739 ProSiteProfiles DDT domain profile. 548 607 IPR018501 -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 117 144 - -
HCH14g0941 1739 Pfam HB1, ASXL, restriction endonuclease HTH domain 730 797 IPR007759 GO:0006355(InterPro)
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1664 1739 - -
HCH14g0941 1739 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1108 1180 IPR028941 -
HCH14g0941 1739 Pfam Homeodomain 34 90 IPR001356 GO:0003677(InterPro)
HCH14g0941 1739 CDD homeodomain 36 91 IPR001356 GO:0003677(InterPro)
HCH14g0941 1739 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677(InterPro)
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1534 1548 - -
HCH14g0941 1739 Gene3D - 33 91 - -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1603 1617 - -
HCH14g0941 1739 SMART testlast3 548 607 IPR018501 -
HCH14g0941 1739 Coils Coil 391 468 - -
HCH14g0941 1739 MobiDBLite consensus disorder prediction 391 419 - -
HCH14g0941 1739 ProSiteProfiles HARE-type HTH domain profile. 730 799 IPR007759 GO:0006355(InterPro)
HCH14g0941 1739 MobiDBLite consensus disorder prediction 1515 1618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0177 HCH-Chr10:1450790 HCH14g0941 HCH-Chr14:36953607 3.70E-70 transposed
HCH2g1340 HCH-Chr2:55364693 HCH14g0941 HCH-Chr14:36953607 7.00E-16 transposed
HCH14g0941 HCH-Chr14:36953607 HCH7g0288 HCH-Chr7:2035892 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32989 PF15613 WSD 1.10E-13 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0941 - - - 0.0