Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0944 ATGTCTCCCATTTTAGCAGCTTCATTTCTCTTCATTTTCCTCCCGACGTTTTGTGTTTCTTTAAACGAAGAAGGTGTTTATCTTCAAACAATCAAAATCTCTCTTGACGATCCTGACTCTTTCCTCTCTTCATGGAATGAAAACGACGAAACTCCTTGTTCATGGTACGGCATTACCTGCGACAACACGACAAATTCTGTACTTTCTCTTAATCTTTCCGATACCAATATTGCTGGTCCTTTCCCTTCTCTCATTTGCCGCCTTTCTAATCTCTCTCATATTTTTCTCTCCAATAACTATATTAACTCCACCTTCCCCGATATCGCCTCCTGTGTCAGTCTCCAAACTCTAGACCTCTCCGACAATCTTCTCGTCGGTCAACTACCTTCCACCTTACATGAACTTCCAAATCTCACCCACCTGAACCTCGCGGGAAATAACTTTTCCGGCAATATTCCTCCGAGCTTCGGGGGGTTTCAAAAACTCGAAATTTTATCTCTTGTTTCGAATCTTCTAGATGGGACAATCCCTCCATTTATTGGGAATATTACTTCTCTTAAAATGCTTAATCTTTCTTATAATCCGTTTTCTCCGGGGAGGCTTCCGCCGGAATTGGGTAATCTCAGGAATCTTAAGGTTATGTGGCTAAGTCATTGTAATTTAGTGGGAGAGATTCCTGATTCATTGGGTAAGCTTAAAAATCTCACTAATTTTGATTTGTCATTAAATCATCTTCGAGGTTCAATCCCGTCGTCGCTTGCTGGATTAACGAGCGTTGTTCAGATTGAATTGTATAATAATTCGTTATCCGGCGTAATCCCAGTTGGGATTTCGAATCTTACGAATTTGAACCGGTTTGACGCGTCATCGAATCGGTTGACAGGGTCCATACCAGAGGAATTCGGTTTGTTACAGATTGAAAGTCTTAATCTTTATGAGAATTCGTTAGAGGGAAACTTGCCGGAAAGTTTAGAAAATTCTAAAGCTTTACGTGAGCTTAATTTATTTGGAAATAGGCTTTCTGGAGAATTACCAAAAAACCTGGGAAAAAACTCTCCTTTGAGATGGCTTGATATTTCCGGTAATCAGTTTTCGGGGAAGTTGCCGGATACTTTGTGTGAAAATGGGAAACTCGAAGAGCTACTTGTGATTAATAACCAGTTTTCCGGTGAGATCCCGGTGAGTCTCGGTGAATGCCTTAGTCTGACTAGGGTCCGTTTAGGAAACAATCGGTTTTCGGGTGTGGTACCAGAGACTTTCTGGGGGCTTCCTCATGTTTATTTTCTCGATCTTGAAAACAATACTTTTTCTGGGAAAATTTCTAAGACAATCGCTGATGCCATGAATCTTTCGATGCTTGCTATTGCGAATAATAATTTCACCGGGCCGATACCGGAGGAGATCGGTGTTTTGGGAAAATTGGTTGAGTTTTTGGGGTATAACAATAGGTTTACTGGATATTTGCCTGATAGCACAGTGAAAATGGAAAGGCTTGCTAAATTGAAACTTCATAATAACAAGCTCACTGGTGAGCTGCCTGCTGATGTCAAGTCTTGGAAGAGTCTGAATGAGCTTAATTTAGCTAATAATGAGTTTTATGGTGACATTCCTGTCTCAATTGCTAGCTTGCCTGTGCTTAATTACCTTGATCTTTCGAGGAATCGGTTTTCGGGGGTAATCCCTCCTGGTTTGCAGAATTTGAATCTCAATCTTTTGAACTTATCATTTAATCAGTTGTCTGGGAGGCTTCCAATCTTATTCCATGAAGAGGTGTACAAGAACAGCTTCCTTGGTAATCCTGCATTGTGTCGCCAGATACATGGTTCGTGTGATCGACAAGCCGAAGCTCGACACGAGGACTTTTTATGGATGCTTCTGCGATGTTTCCTTATATTTTGTAGTTTAGTTTTCATCATGGGTGTGGTTTGGTTCCACTTCAACTACAAGAAATTTCAGAAGATAAAGACAGCTAACGAAGAATCGAAATGGACAATGATATCGTTCTACAAACTTTCTTTTGATGAAGATGAGATTTTGGATAGCTTTGATGAGGAGAGTGTGATAGGCAGTGGATTCTCCGGCCAAGTTTACAAGGTTATCCTTCGCAACGGTGAGGCTGTTGCCATAAAGAAACTTTGGGGTGAGGCGGGAAAAGAAAGCGACTGTGGCGATTCTGTAAATGATTGGAATCAAGCCAATGCTTTTGATGCTGAAGTGAAGACTTTGGGTAAAATTAGGCACAAGAACATAGTGAAATTGTGGTGTTGCTGTGCTAATAAATACTGCAAACTTTTGGTGTATGAGTACATGCCTAATGGGAGCTTGGGGGATTTGCTTCATAGCAGTAAAGGAGGGTCATTGGCTTGGCCAGCAAGGTACAAGATAGCCTTAGATGCTGCTGAGGGGATTTCTTATCTTCATCACGATTGCGTTCCTCCGATTGTACACAGAGATATCAAGTCGAACAATATTTTGTTGGACGCCGATTTCGGAGCAACGGTAGCTGATTTTGGAGTGTCTAAGGCTTTGGATGTGTCCGAGAGCGAGGCTATATCCATGTCGGTTGTTGCTGGTACTTATGGTTATATTGCCCCAGAATATGCTTATACATCGAGAGTGAATGAGAAGAGTGACGTTTATAGTTTTGGAGTGGTTATCCTCGAGTTGATAACCGGGAGAAGCCCAACCGACCCCGAGTTTGGAGAAAAGGATCTGGTGAAATGGGTATGCATCACTTTAGATCAGAAAGGTATAGAAGGAGTCCTAGACCCCATACTAGATTTATGTTTCAAAGAAGAAATATGCAAGGTCCTTGACATTGGACTCCTCTGCACTAACCCTCTCCCTATCAACCGGCCATCAATGAGAAGAGTTGTTAAATTGTTGCAAGAAGTTGATTCAGAAAATCAGTCAAAATCTGGCAGGAGAGACGGGAAATTGGATCCATATTATTCTGATGATGCATCAGATCAAGGAAGTGTGGCTTAA 2988 41.53 MSPILAASFLFIFLPTFCVSLNEEGVYLQTIKISLDDPDSFLSSWNENDETPCSWYGITCDNTTNSVLSLNLSDTNIAGPFPSLICRLSNLSHIFLSNNYINSTFPDIASCVSLQTLDLSDNLLVGQLPSTLHELPNLTHLNLAGNNFSGNIPPSFGGFQKLEILSLVSNLLDGTIPPFIGNITSLKMLNLSYNPFSPGRLPPELGNLRNLKVMWLSHCNLVGEIPDSLGKLKNLTNFDLSLNHLRGSIPSSLAGLTSVVQIELYNNSLSGVIPVGISNLTNLNRFDASSNRLTGSIPEEFGLLQIESLNLYENSLEGNLPESLENSKALRELNLFGNRLSGELPKNLGKNSPLRWLDISGNQFSGKLPDTLCENGKLEELLVINNQFSGEIPVSLGECLSLTRVRLGNNRFSGVVPETFWGLPHVYFLDLENNTFSGKISKTIADAMNLSMLAIANNNFTGPIPEEIGVLGKLVEFLGYNNRFTGYLPDSTVKMERLAKLKLHNNKLTGELPADVKSWKSLNELNLANNEFYGDIPVSIASLPVLNYLDLSRNRFSGVIPPGLQNLNLNLLNLSFNQLSGRLPILFHEEVYKNSFLGNPALCRQIHGSCDRQAEARHEDFLWMLLRCFLIFCSLVFIMGVVWFHFNYKKFQKIKTANEESKWTMISFYKLSFDEDEILDSFDEESVIGSGFSGQVYKVILRNGEAVAIKKLWGEAGKESDCGDSVNDWNQANAFDAEVKTLGKIRHKNIVKLWCCCANKYCKLLVYEYMPNGSLGDLLHSSKGGSLAWPARYKIALDAAEGISYLHHDCVPPIVHRDIKSNNILLDADFGATVADFGVSKALDVSESEAISMSVVAGTYGYIAPEYAYTSRVNEKSDVYSFGVVILELITGRSPTDPEFGEKDLVKWVCITLDQKGIEGVLDPILDLCFKEEICKVLDIGLLCTNPLPINRPSMRRVVKLLQEVDSENQSKSGRRDGKLDPYYSDDASDQGSVA 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 36975423 36978634 + evm.model.ptg000014l.264 HCH14g0944 558847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0944 995 SMART serkin_6 682 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0944 995 Gene3D Transferase(Phosphotransferase) domain 1 770 988 - -
HCH14g0944 995 SUPERFAMILY Protein kinase-like (PK-like) 669 962 IPR011009 -
HCH14g0944 995 Pfam Leucine Rich Repeat 185 208 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 521 543 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 234 256 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 546 567 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 306 326 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 330 350 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 401 423 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 354 373 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 282 303 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 Pfam Leucine Rich Repeat 210 232 IPR001611 GO:0005515(InterPro)
HCH14g0944 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 966 IPR050647 -
HCH14g0944 995 MobiDBLite consensus disorder prediction 967 984 - -
HCH14g0944 995 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
HCH14g0944 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0944 995 Gene3D Ribonuclease Inhibitor 277 619 IPR032675 -
HCH14g0944 995 FunFam Leucine-rich receptor-like protein kinase family protein 201 299 - -
HCH14g0944 995 Gene3D Ribonuclease Inhibitor 174 275 IPR032675 -
HCH14g0944 995 Gene3D Ribonuclease Inhibitor 23 173 IPR032675 -
HCH14g0944 995 ProSiteProfiles Protein kinase domain profile. 682 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0944 995 FunFam Receptor-like protein kinase HSL1 666 769 - -
HCH14g0944 995 Gene3D Phosphorylase Kinase; domain 1 665 769 - -
HCH14g0944 995 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524(InterPro)
HCH14g0944 995 MobiDBLite consensus disorder prediction 967 995 - -
HCH14g0944 995 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 183 - -
HCH14g0944 995 SUPERFAMILY RNI-like 69 415 - -
HCH14g0944 995 SMART LRR_typ_2 399 422 IPR003591 -
HCH14g0944 995 SMART LRR_typ_2 543 566 IPR003591 -
HCH14g0944 995 SMART LRR_typ_2 135 158 IPR003591 -
HCH14g0944 995 SMART LRR_typ_2 88 112 IPR003591 -
HCH14g0944 995 SMART LRR_typ_2 280 303 IPR003591 -
HCH14g0944 995 SMART LRR_typ_2 183 208 IPR003591 -
HCH14g0944 995 SMART LRR_typ_2 232 255 IPR003591 -
HCH14g0944 995 SUPERFAMILY L domain-like 329 602 - -
HCH14g0944 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 770 979 - -
HCH14g0944 995 Pfam Protein kinase domain 683 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0944 995 FunFam Receptor-like protein kinase HSL1 305 612 - -
HCH14g0944 995 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0944 HCH-Chr14:36975423 HCH14g1204 HCH-Chr14:38644274 2.10E-08 dispersed
HCH10g0921 HCH-Chr10:11992425 HCH14g0944 HCH-Chr14:36975423 3.80E-07 transposed
HCH14g0944 HCH-Chr14:36975423 HCH3g0677 HCH-Chr3:4775996 6.30E-29 wgd
HCH14g0944 HCH-Chr14:36975423 HCH7g0287 HCH-Chr7:2022882 4.50E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81251 PF00069 Pkinase 3.70E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0944 - - - 0.0