Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0950 ATGGGTGTTTTGATTGATCTCAATACTACTGAAGAAGATGAATCAGCTCCATCTTCTGCTGGTTCTTCTGTTTCTTCTTCCTCAGCTTCTGCTTTAACATCATCTCCTCCTGCTACTTCCTCATCAATTTGCTTGGAACTATGGCATGCTTGTGCTGGACCACTTATTTCTCTGCCTAAAAAAGGCAGCTTGATTGTGTATCTGCCTCAAGGTCATTTGGAACAGATTCAAGAATTTCAGACCATTGCTTCTTATGATGTTCCTCCACATCTTCTTTGTCGTGTCATTGATGTTCAGCTTCATGCTGAGGCAGGGAGTGATGAGGTTTATGCTCAGGTTTCATTGTTTCCGGAAAACGAGCAAATAGAGAGGAAAATGCAGGAGGAAGACATGAATACTGACACCGAGGATGAAGATGTTGAAGGAGCTGAGAAATCTACAACACCTCACATGTTCTGTAAGACCCTTACTGCTTCAGATACTAGTACTCATGGAGGCTTTTCAGTTCCCCGTCGAGCTGCTGAGGATTGCTTCCCGCCCCTGGATTATAACCAGCAGAGGCCTTTGCAAGAGCTTGTAGCAAAGGATCTTCATGGGCTTGAATGGAAATTCAGGCACATTTATCGTGGGCAGCCTAGAAGGCATTTGCTGACCACTGGATGGAGTGCATTTGTGAACAAGAAGAGGCTTGTCTCTGGAGATGCAGTGCTTTTTCTTAGGGGTAACGACGGAGAATTAAGATTGGGAATCCGTAGAGCTGTGCAACTTAAGAGTGGTTCTGCCTTTTCTAGTATTGGTTCTCAGCAGTTCAACACTAGTAGCATCGTGGATGTGGCTAATGCTATAGCAACAAAAACTTCCTTTAGCGTATTCTACAATCCCAGGGCTAGCTCTTCACAGTTTGTTCTCCCTTTGAACAAGTTCTTGAAGAGCATTAACCATTCTCTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACTGAAGATGCGGCAGAGCGAAGATACACTGGACTGATAACTGGTGTTGGTGATGTGGATCCAATTAGATGGCCAGGATCAAAATGGAGGTCTCTTGTGGTGAGATGGGATGATGTTGAAACTAACAGGCAGGGCAGGGTTTCACCTTGGGATATTGAGCCCTCTGGTTCTATCTCAGGGTCTAGCAACTTGGTTCCACCTGGTTTGAAAAGGACAAGGATTGGGCTGTCTTCTTCTAAACTAGAGTTTTCGGTTCCTAATGGGATTGGAGCATCAGACTTTGAGGAATCTTTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTTACAATACCCTGGTTGATGGTGATGACAACAGTCAGCATCCATCTGAAAAGAGGAGATTGTTTCCTAGTTTACCTGGTTCTGGGATAGCTGTGGTAAGAAATGGTGCTAGAAACCCACTTATGAACTCTGACATAACCTCTCGAGGTGTCGTGTTTGGTGAACCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCATTTTACGGTAGAGCCATACCTACAAATGAAGATAAGGCAAGTGGTGGTTGTGGCTTTGTTGAAAGTGTACGATTATCTAGATCTAAAGATGGATGGCCACTGGCAATGCAACGTGAAAATTTACTCACACGCTCTACCGTTCCTTCTGTACATGTCTCGTCACCATCATCTGTATTGACGTTTCAGCAGGCAATGAACCCTCTTCAAAGTTTCAACTCACCTGACTGTGGCAATTATGTAGAGAAGAGGGTTGTGAACAGAAATACATCACATATTTTCGGAACAGCATTGACAACCGACCATAGCTCAAATAAGAAAGTTCCAGATGACATGCATTTTACTCTACTGAGCGATCAAAACCAACTTGGCACATCAAATCCTTCTTCAACAACATCAGCCTTTACAAGCAGTAAAGATTTATCTTCAACATGCAAAGCTGGCTGCAGACTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGCTGGAAATACAGACAAGGCTTCTCCAATTACATCTCATTTTAATGTTGGAACCCCTGTTTTGTCCAGTGTTGGAGTACCATGTCCTTTGAAGTCTCCACTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGAGCTTTCCAGCACCGTTTTGCAAACTACACTTCCTTCTATTGA 2187 43.48 MGVLIDLNTTEEDESAPSSAGSSVSSSSASALTSSPPATSSSICLELWHACAGPLISLPKKGSLIVYLPQGHLEQIQEFQTIASYDVPPHLLCRVIDVQLHAEAGSDEVYAQVSLFPENEQIERKMQEEDMNTDTEDEDVEGAEKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPLQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAVQLKSGSAFSSIGSQQFNTSSIVDVANAIATKTSFSVFYNPRASSSQFVLPLNKFLKSINHSLSVGMRFRLSFETEDAAERRYTGLITGVGDVDPIRWPGSKWRSLVVRWDDVETNRQGRVSPWDIEPSGSISGSSNLVPPGLKRTRIGLSSSKLEFSVPNGIGASDFEESLRFRKVLQGQEILGYNTLVDGDDNSQHPSEKRRLFPSLPGSGIAVVRNGARNPLMNSDITSRGVVFGEPFQFHKVLQGQEIFPSPFYGRAIPTNEDKASGGCGFVESVRLSRSKDGWPLAMQRENLLTRSTVPSVHVSSPSSVLTFQQAMNPLQSFNSPDCGNYVEKRVVNRNTSHIFGTALTTDHSSNKKVPDDMHFTLLSDQNQLGTSNPSSTTSAFTSSKDLSSTCKAGCRLFGFSLTEEKNAGNTDKASPITSHFNVGTPVLSSVGVPCPLKSPLMSKVVGSNCTKGAFQHRFANYTSFY 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37009119 37013439 - evm.model.ptg000014l.258 HCH14g0950 558853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0950 728 SUPERFAMILY DNA-binding pseudobarrel domain 146 260 IPR015300 -
HCH14g0950 728 MobiDBLite consensus disorder prediction 11 32 - -
HCH14g0950 728 Gene3D - 315 389 - -
HCH14g0950 728 Gene3D - 150 254 IPR015300 -
HCH14g0950 728 FunFam Auxin response factor 315 386 - -
HCH14g0950 728 FunFam Auxin response factor 150 254 - -
HCH14g0950 728 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677(InterPro)
HCH14g0950 728 MobiDBLite consensus disorder prediction 1 32 - -
HCH14g0950 728 SMART B3_2 152 254 IPR003340 GO:0003677(InterPro)
HCH14g0950 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 677 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH14g0950 728 Pfam Auxin response factor 278 359 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH14g0950 728 CDD B3_DNA 150 252 IPR003340 GO:0003677(InterPro)
HCH14g0950 728 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0950 HCH-Chr14:37009119 HCH2g1164 HCH-Chr2:54214162 7.70E-133 dispersed
HCH14g0950 HCH-Chr14:37009119 HCH3g0834 HCH-Chr3:6324251 5.50E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32991 PF02362 B3 8.80E-22 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0950 K14486 - csv:101220018 1080.47