Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0987 ATGGCTGAGGTCCACAGCAGCAACCATGGAGGTATTAAGCTCTTCGGAACAATGATTACGTTGCAAGGCCGAATAAAGGAGGAGCCCGAAAAAGCCGATGATGATCAAACGGAGATGAAGAGGCCAGAAAAGATCATACCATGTCCAAGATGCAAGAGTATGGAGACTAAATTCTGTTACTTCAACAACTACAATGTTAATCAGCCTAGACATTTCTGCAAAGGCTGCCAAAGGTACTGGACAGCCGGCGGGGCACTCCGAAACGTGCCTATCGGAGCTGGCCGCCGTAGAGCAAAGCCGCCTATTTGTCACAGCCTCACCGGCGAAGATTACCAGTTCTTTGATACTAATTCTAGGGTTATACACCAGCTTGAGTTAGATGGGGTAGGGCGGTGGCACATCACGGTGGCAGAAGAAGGTTTCCGACAAGCTTTTCCCACGAAACGGCAGAAGATCAGCCAACGGGGTCAAACGCCTTAG 480 49.79 MAEVHSSNHGGIKLFGTMITLQGRIKEEPEKADDDQTEMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPICHSLTGEDYQFFDTNSRVIHQLELDGVGRWHITVAEEGFRQAFPTKRQKISQRGQTP 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37225631 37226110 - evm.model.ptg000014l.221 HCH14g0987 558890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0987 159 PANTHER CYCLIC DOF FACTOR 2 28 105 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0987 159 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0987 159 Pfam Dof domain, zinc finger 44 99 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0987 159 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0987 HCH-Chr14:37225631 HCH3g0065 HCH-Chr3:382593 1.40E-31 dispersed
HCH14g0987 HCH-Chr14:37225631 HCH3g0702 HCH-Chr3:4997147 8.20E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT1G29160 56.3 1.5e-45 179.5
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT1G29160 51.2 1.8e-40 162.5
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT2G34140 56.1 9.8e-47 183.3
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT2G34140 51.2 7.0e-37 150.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.0
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.2e-38 154.8
HCH3g1348 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 56.0 6.1e-37 151.8
HCH14g0246 . 1 215 C2C2-Dof Transcription Factor Family AT5G66940 51.3 6.9e-48 187.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT5G02460 64.4 3.0e-38 156.4
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.6 9.6e-37 151.4
HCH3g1348 . 61 134 C2C2-Dof Transcription Factor Family AT5G02460 87.8 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005702 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32996 PF02701 zf-Dof 1.40E-31 No_clan HCH TF