Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0987 ATGGCTGAGGTCCACAGCAGCAACCATGGAGGTATTAAGCTCTTCGGAACAATGATTACGTTGCAAGGCCGAATAAAGGAGGAGCCCGAAAAAGCCGATGATGATCAAACGGAGATGAAGAGGCCAGAAAAGATCATACCATGTCCAAGATGCAAGAGTATGGAGACTAAATTCTGTTACTTCAACAACTACAATGTTAATCAGCCTAGACATTTCTGCAAAGGCTGCCAAAGGTACTGGACAGCCGGCGGGGCACTCCGAAACGTGCCTATCGGAGCTGGCCGCCGTAGAGCAAAGCCGCCTATTTGTCACAGCCTCACCGGCGAAGATTACCAGTTCTTTGATACTAATTCTAGGGTTATACACCAGCTTGAGTTAGATGGGGTAGGGCGGTGGCACATCACGGTGGCAGAAGAAGGTTTCCGACAAGCTTTTCCCACGAAACGGCAGAAGATCAGCCAACGGGGTCAAACGCCTTAG 480 49.79 MAEVHSSNHGGIKLFGTMITLQGRIKEEPEKADDDQTEMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPICHSLTGEDYQFFDTNSRVIHQLELDGVGRWHITVAEEGFRQAFPTKRQKISQRGQTP 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37225631 37226110 - evm.model.ptg000014l.221 HCH14g0987 558890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0987 159 PANTHER CYCLIC DOF FACTOR 2 28 105 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g0987 159 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0987 159 Pfam Dof domain, zinc finger 44 99 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH14g0987 159 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0987 HCH-Chr14:37225631 HCH3g0065 HCH-Chr3:382593 1.40E-31 dispersed
HCH14g0987 HCH-Chr14:37225631 HCH3g0702 HCH-Chr3:4997147 8.20E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32996 PF02701 zf-Dof 1.40E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0987 - - - 0.0