Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g0996 ATGGAAGTTGTAAAAATGGTTCCTTTTTTCTTCATCGTTGGTTTCGTCTCTGCCTTGGACAGTCATTTATCTCCAAAGGGTGTTAACTATGAAGTGGCAGCTTTGATGTCAGTGAAGAGTAAGATAAGGGATGAGAAGAGAGTGATGGAGGGTTGGGATATAAATTCGGTTGATCCATGCACATGGAATATGGTTGCTTGCTCTGCTGAAGGCTTTGTTATTTCTCTTGAGATGCCTAATATGGGCTTATCAGGAATGCTTTCTTCTAGTATCGGCAATTTGAGTCATCTTAGAACAATGTTGCTGCAAAATAATCAGTTATCTGGTCAAATTCCAGAGAATATTGGAAACCTTTCAGAGCTTCAGACTCTGGACTTTTCCAGTAACCAGTTTGTAGGAACCATTCCAAGCTCTTTAGGGTTTCTTAGTCATCTACATTACTTGAAGCTTAGAGGAAACAAGTTAAGTGGACAGATACCGAAATCTGTTGCAAACATGTCTGGCCTTTCCTTCTTGGATTTATCGAACAACAATCTTAGCGGTCCAACTCCGAGAATACTAGCCAAAGATTACAGTATTGCAGGGAACAGTTTCCTTTGTGCGTCTTCATCATCAGAAGTTTGTGGTGTGGATTTGAAACCAGTTAATGAAACTGGTTCTCCTCAGAAAGTCAATGGCAATCATCATTTGGTGCTTTCAATAGCTCTAATTGTCAGTTTCACATTTGTGGTATCTCTATTGTTGCTTATTGGCTGGGTGCATTGTTATAGATCTCATGCTCTCTTCACATCTTATGTGCAGCAAGATTATGAATTTGATATAGGTCATCTTAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGCAGTTTCAGTCCTAAAAACATTCTGGGGCAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACGTATATCGCAGTCAAGAGACTGAAAGATCCGAATTATACTGGAGAAGTGCAATTTCAAACTGAGGTTGAGATGATTGGATTAGCAGTGCACCGCAACCTCTTGCGTTTGTTTGGATTTTGTATGACACCAGATGAGAGGTTGCTTATTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGCTTAAGAGATGCAGGACAAGAGAAGCCATCGTTGAATTGGAATCGAAGATTGCGAATTGCACTCGGGGCAGCTCGCGGACTTCTATACTTACATGATCAGTGTAACCCGAAAATTATTCACAGAGATGTGAAAGCTGCGAATATTCTTTTGGATGAAAGCTTTGAAGCTGTAGTTGGGGATTTTGGTCTGGCTAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGAGGCACTATTGGTCATATTGCCCCAGAGTATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAGCTCCTAACTGGACAAAAAGCACTTGATGCTGGCAATTCTCAGGTTCGAAAAGGAATGATCCTTGATTGGGTTAAAACATTACATGAAGAGAAGAGGTTAGAAGTGCTGGTGGATAGAGATCTAAAAGGGTGTTTCGACGCAACGGAGCTCGAAAAAGCCGTGGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAGCTTCGACCAAAGATGTCGGAAATCTTGAAGATTTTTGAAGGTCTTGTTGAACAGTCAGGGCAAATGGATGAATCACAAGGTGGGGTGAGTCTCTATGAAGATAGAGCACACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTCGTTGTGGAAGCTATGGAGCTTTCGGGACCTCGGTGA 1848 41.07 MEVVKMVPFFFIVGFVSALDSHLSPKGVNYEVAALMSVKSKIRDEKRVMEGWDINSVDPCTWNMVACSAEGFVISLEMPNMGLSGMLSSSIGNLSHLRTMLLQNNQLSGQIPENIGNLSELQTLDFSSNQFVGTIPSSLGFLSHLHYLKLRGNKLSGQIPKSVANMSGLSFLDLSNNNLSGPTPRILAKDYSIAGNSFLCASSSSEVCGVDLKPVNETGSPQKVNGNHHLVLSIALIVSFTFVVSLLLLIGWVHCYRSHALFTSYVQQDYEFDIGHLKRFTFRELQKATCSFSPKNILGQGGFGVVYKGYLPNGTYIAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPDERLLIYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHDQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNSQVRKGMILDWVKTLHEEKRLEVLVDRDLKGCFDATELEKAVELALQCTQSHPQLRPKMSEILKIFEGLVEQSGQMDESQGGVSLYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37289356 37292428 + evm.model.ptg000014l.212 HCH14g0996 558899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g0996 615 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
HCH14g0996 615 FunFam Somatic embryogenesis receptor kinase 1 261 367 - -
HCH14g0996 615 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515(InterPro)
HCH14g0996 615 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 615 - -
HCH14g0996 615 SUPERFAMILY Protein kinase-like (PK-like) 276 569 IPR011009 -
HCH14g0996 615 SUPERFAMILY L domain-like 30 192 - -
HCH14g0996 615 SMART serkin_6 292 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0996 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g0996 615 Pfam Protein kinase domain 295 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0996 615 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
HCH14g0996 615 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 210 - -
HCH14g0996 615 ProSiteProfiles Protein kinase domain profile. 292 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g0996 615 FunFam Somatic embryogenesis receptor-like kinase 1 368 579 - -
HCH14g0996 615 Gene3D Transferase(Phosphotransferase) domain 1 368 578 - -
HCH14g0996 615 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524(InterPro)
HCH14g0996 615 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
HCH14g0996 615 Gene3D Phosphorylase Kinase; domain 1 262 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0996 HCH-Chr14:37289356 HCH4g0034 HCH-Chr4:212341 1.10E-156 dispersed
HCH8g1271 HCH-Chr8:47913624 HCH14g0996 HCH-Chr14:37289356 1.40E-58 dispersed
HCH14g0996 HCH-Chr14:37289356 HCH6g0639 HCH-Chr6:38236753 1.80E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81255 PF00069 Pkinase 1.70E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g0996 - - - 0.0