Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1006 ATGATGTCGAAATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATCATGAGTCGTGAGAGAAAGCGGCTTCCAAGAGTAATGACTGTTGCTGGGGTAATATCAGAGCTTGATGATGACCAGGCTAATAGTGTGACTTCGGAGGGACCTTCGTCGGTTGTGCAAGACCGTATAATTATTGTTGCTAATCAGCTTCCTATAAAAGCCAAGCGTAGACCGGATAATAAAGGATGGAGTTTTAGTTGGGATGAAGATTCTTTGTTGTGGCAGCTTAAGGATGGTTTACCTGAAGATATGGAGGTATTGTATGTAGGTTCTTTGCGGGTGGATGTTGATTCGAGTGAGCAAGATGACGTATCGCAGCTTTTGTTGGAGAGGTTTAAGTGTGTGCCTGCATTTTTACCGCCTGATGTTCTGTCGAAATTTTACCATGGTTTTTGTAAACAGCAATTGTGGCCACTCTTTCATTATATGCTTCCATACTCATCAACCCATGGTGGTCGGTTTGATCGGTCTCTTTGGGAGGCATATGTAGCAGCAAATAAAATCTTTTCACAAAGGGTGATTGAGGTCATAAACCCTGATGACGACTTTGTGTGGATTCATGATTACCATTTGATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGATTTTTTCTTCATAGTCCATTTCCTTCATCAGAAATATATAGGACTCTACCAGTGAGGGAAGAGATCCTTAAGGCTCTTTTGAATTCAGACCTTATTGGTTTTCACACTTTTGACTATGCTCGACATTTCCTGTCATGTTGCAGTCGGATGTTGGGTTTGGAGTATCAGTCAAAGAGAGGTTATATTGGGTTGGAATATTTTGGAAGAACTGTGGGGATTAAGATCATGCCTGTTGGGATTCACATGGGCCAGATTGAGTCAATACTAAGACTTGCTGATAAAGACTGGAGGGTACAAGAGCTTAAGCGGCAGTTTGAAGGAAAAATTGTCTTACTTGGAGTTGATGATATGGACATTTTTAAAGGGGTTAATCTGAAGTTGTTGGCAATGGAACAAATGCTTAAGCAACATCCAAAGTGGCAGGGAAGAGCCGTCTTGATACAGATTGCAAACCCTGCTAGAGGAAGAGGGAAAGATCTTGAGGAAATACAAGATGAAATACAGGAAAGCTGCAAGAGAATTAATGAAAGTTTTGGACAGTCAAATTATGAACCAATTGTGTTCATTGATCGGCCTGTTTCTCTCTCTGAAAGAGCTGCTTATTATACTATCGCCGAGTGTGTTGCTGTTACCGCTGTGAGGGATGGTATGAACCTTACTCCGTATGAGTACGTTGTATGCAGGCAAGGAATCTCAGGATCAGATTATAGCACTGAATCGAATGGACCAAAAAAGAGCATGCTAGTGATATCAGAGTTTCTGGGATGTTCCCCTTCTCTAAGTGGTGCAATACGGGTTAATCCATGGAACATTGAAGCAACTGCTGAAGCATTGAATGAGGCAATATCAATGTCCGATGCTGAGAAGCTACTGCGTCATGAAAAGCATTACAAATATGTGAGCACACATGATGTGGCATACTGGTCAAAGAGCTTTTTCCAAGATATGGAACGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGTTTGGGCTTTGGTTTCAGAGTTGTTGCACTTGATCCTAATTTTAAGAAATTGTCTATTGATGCTATTGTATCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTATGGATTATGATGGCACTGTTATGCCACAAACTTCAATTGATAAGACCCCAAGTCATGAGGTTATCTCAATCATAGATTCACTCTGTAGTGATGTTAGGAATACTGTTTTTGTTGTCAGTGGGAGAGGACGGGATAGTTTGGGCAGCTGGTTTTCTCCTTGCAATAAACTTGGCATTGCTGCTGAGCATGGCTATTTTATGAGGTGGCCTGCTGCCAAGGATTGGGAAAATTGCGGGCAGAGTAGTGAATTTGGCTGGATACAGATAGCAGAGCCGGTTATGAAATTATACACAGAAGCTACTGATGGCTCATCTATTGAAACTAAAGAAAGTGCCTTGGTATGGCACCACCAGGATGCTGACCCTGATTTTGGGTGCGGCCAAGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCGGTTGCTGTAAAAAGGGGCCAGTTTATTGTTGAAGTAAAGCCACAGGGAGTCAGCAAAGGTTTGGTAGCTGAAAAGATCTTCACGTCAATGGCAAACACAGGAAGACAGGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGATATGTTTGAGATTATTGGCAATGCATTGTCTAGTGGTATTCTTTCTTCCAATACATTGGTTTTTGCATGCACGGTTGGGCAGAAACCAAGCAAAGCTAAGTACTACTTGGATGACACAGCTGAGGTCATAAATATGCTTGAAGCCCTAGCAGAAGCTTCTGAGGCCTCTTCTCCACCGGATTCCCCTTGA 2553 42.26 MMSKSYTNLLDLASGNFPIMSRERKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPPDVLSKFYHGFCKQQLWPLFHYMLPYSSTHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQIESILRLADKDWRVQELKRQFEGKIVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVLIQIANPARGRGKDLEEIQDEIQESCKRINESFGQSNYEPIVFIDRPVSLSERAAYYTIAECVAVTAVRDGMNLTPYEYVVCRQGISGSDYSTESNGPKKSMLVISEFLGCSPSLSGAIRVNPWNIEATAEALNEAISMSDAEKLLRHEKHYKYVSTHDVAYWSKSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFKKLSIDAIVSAYSRSKRRAILMDYDGTVMPQTSIDKTPSHEVISIIDSLCSDVRNTVFVVSGRGRDSLGSWFSPCNKLGIAAEHGYFMRWPAAKDWENCGQSSEFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCGQAKELLDHLESVLANEPVAVKRGQFIVEVKPQGVSKGLVAEKIFTSMANTGRQADFVLCIGDDRSDEDMFEIIGNALSSGILSSNTLVFACTVGQKPSKAKYYLDDTAEVINMLEALAEASEASSPPDSP 850
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 37347846 37351995 + evm.model.ptg000014l.202 HCH14g1006 558909
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1006 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH14g1006 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
HCH14g1006 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH14g1006 850 Gene3D Glycogen Phosphorylase B; 54 312 - -
HCH14g1006 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
HCH14g1006 850 Gene3D Glycogen Phosphorylase B; 313 527 - -
HCH14g1006 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
HCH14g1006 850 NCBIfam trehalose-phosphatase 587 838 IPR003337 GO:0005992(InterPro)
HCH14g1006 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
HCH14g1006 850 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 849 - -
HCH14g1006 850 Gene3D - 719 847 IPR023214 -
HCH14g1006 850 Gene3D - 589 694 IPR023214 -
HCH14g1006 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
HCH14g1006 850 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
HCH14g1006 850 CDD HAD_TPP 591 832 - -
HCH14g1006 850 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
HCH14g1006 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1006 HCH-Chr14:37347846 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g0188 HCH-Chr1:17369445 HCH14g1006 HCH-Chr14:37347846 0.00E+00 transposed
HCH14g1006 HCH-Chr14:37347846 HCH7g0126 HCH-Chr7:833987 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1006 K16055 - csv:101213082 1593.17