Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1015 ATGGCTGAGATTTCAGGAGTAAGTAATGGACACCATGGAGTTTCTTTGAATATTAAAGATGGTGATGATGTTAATAACTCAGCCTCTACTATCAAACAAGACTCACCTTCCTGTATCTCTGTACCTTTCATTCAGAAGATGATTGCAGAGGTTGTGGGCACATATTTCTTGATATTTGCTGGTTGTGCATCAGTGGTGGTGAATTTGAACAAAGAAAAAGTCATAACTTTCCCAGGAATTTCAATTGTATGGGGTTTGGTTGTGATGGTGATGATCTATTCAGTTGGTCATATCTCTGGTGCCCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACAAAGAGATTTCCATGGAAACAGGTACCACCCTATGTGGCAGCTCAAGTTCTTGGATCAACATTAGCAAGTGGGACACTTAGACTAATATTTAATGGAAAACAAGATCACTTTGCTGGGACTCTTCCATCTGACTCATATCTCCAAACCTTTGTCATAGAATTCATAATCACTTTTTACCTCATGTTTGTCGTTTCAGGCGTCGCCACTGACAACAGAGCGATCGGTGAACTTGCTGGACTTGCTGTGGGTTCCACAGTGCTTCTCAATGTGATGTTTGCAGGGCCAATAACAGGAGCATCCATGAATCCAGCAAGAAGCTTGGGGCCTGCTATAGTCTCAAGAGAATTCAAGGGGTTATGGATTTACATGTTAGCTCCCACTGCTGGGGCAATTACAGGTGCTTGGGTCTACAATGTCATCAGATTCACAGACAAACCTCTCAGAGAAATAACCAAAAGTGGCTCTTTCCTTAAACAAGCTCGTAATGCCTCTGCTTGA 840 42.38 MAEISGVSNGHHGVSLNIKDGDDVNNSASTIKQDSPSCISVPFIQKMIAEVVGTYFLIFAGCASVVVNLNKEKVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTIAFATTKRFPWKQVPPYVAAQVLGSTLASGTLRLIFNGKQDHFAGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSREFKGLWIYMLAPTAGAITGAWVYNVIRFTDKPLREITKSGSFLKQARNASA 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37395091 37396631 + evm.model.ptg000014l.193 HCH14g1015 558918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1015 279 PANTHER AQUAPORIN NIP2-1 26 259 IPR034294 -
HCH14g1015 279 Pfam Major intrinsic protein 40 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 MobiDBLite consensus disorder prediction 1 21 - -
HCH14g1015 279 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 SUPERFAMILY Aquaporin-like 39 264 IPR023271 -
HCH14g1015 279 CDD MIP 45 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 Gene3D Glycerol uptake facilitator protein. 17 265 IPR023271 -
HCH14g1015 279 NCBIfam MIP family channel protein 49 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH14g1015 279 ProSitePatterns MIP family signature. 102 110 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1015 HCH-Chr14:37395091 HCH9g0413 HCH-Chr9:2596657 1.80E-82 dispersed
HCH14g1015 HCH-Chr14:37395091 HCH9g0227 HCH-Chr9:1349192 6.70E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1015 K09874 - csv:101219297 450.669