Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1022 ATGAATAGTCCGGTGAGGTTTAGGTTAGGGAAACAGTCGTCGCTGGCGCCGGACGGCCATTTTGAAGATTTGGAGGAGCTGCTTAAAGAGCATGAAGCTGTGGAAGGGATTGATCCGAGGGTTAGGTTAATGTATTTAGCTAATGAAGGTGATTTAGATGGGATTAAGGAGCTATTGGATTCTGGAATTGATGTCAATTTTCACGATATTGATCATCGGACGGCTCTTCATGTTGCTGCTTGCCAGGGTTTTTCTGATGTTGTTCGTTTCTTGCTTGAACGTGGCGCTGAACCTGATTCTAAAGATCGCTGGGGTAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCATGATGTGATCAAACTTTTGGAGAAGCATGGTGCAAAGCCTCTGGTGGCCCCCATGCAAGTTAAGTATGCTCGTGAAGTGCCAGATTATGAAATTGATCCTAAAGAACTTGATTTCTCCAAAAGTGTGAACATTACCAAGGGAACCTTCCGTGTAGCATCTTGGCGTGGAACTGAAGTTGCTGTGAAAGAGCTTGGAGAAGAACTTTTCACTGATGAGGATAAAGTGAGGGCATTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTTCAGTTTCTGGGTGCTGTGACTCAAAGTTGTCCGATGATGATCGTTACAGAATATTTACCGAAGGGAGATCTTGGAGCATTATTGAGACGGAAAGTAGCAATAAAAACAATGACTGTTGTGAGACTTGCCCTGGATATTGCAAGGGGGATGAATTACTTGCACGAGAATAAGCCAGCACCAATTATTCATCGTGATCTCGAGCCTTCAAATATTCTGCGTGATGATACTGGACACCTGAAAGTAGCAGACTTTGGAGTTAGCAAGTTACTTACAGTTAAAGAATATAGACCTTTGACTTGTACAGATACTTCTCGACGATATGAGGCTCCGGAGGTTTTTAAAAATGAAGAATATGATACTAAGGTTGACGTATTTTCATTTGCTTTGATTCTTCAAGAGATGATAGAGGGCTGCCCTCCATTTTCTGACAAGCCAGACGATGACGTTCCCAAATTGTATGCAGCTGGAGAACGTCCACCTTTTAGAGCACAGCAAAAACGTTATGCAAATGGACTTAAAGAGCTAATTGCGGAATGTTGGAACGAGAAGCCAGCGAAGAGACCGTCATTTAGGCAGATAATAACACAGCTGGAATTCATCTACAACAGATTTGGTCAAAAGAGGGGCTGGAAGGTGAAGCCATTGAAATGCTTTCAGAATATTGAGGCATTGTTGAAAAAAGATCGCTCCAGCCGAAGCAGTCACAGTCTATCAACACATTCTACTGCCAGCAGTATATGA 1377 42.99 MNSPVRFRLGKQSSLAPDGHFEDLEELLKEHEAVEGIDPRVRLMYLANEGDLDGIKELLDSGIDVNFHDIDHRTALHVAACQGFSDVVRFLLERGAEPDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPLVAPMQVKYAREVPDYEIDPKELDFSKSVNITKGTFRVASWRGTEVAVKELGEELFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIVTEYLPKGDLGALLRRKVAIKTMTVVRLALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGHLKVADFGVSKLLTVKEYRPLTCTDTSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFSDKPDDDVPKLYAAGERPPFRAQQKRYANGLKELIAECWNEKPAKRPSFRQIITQLEFIYNRFGQKRGWKVKPLKCFQNIEALLKKDRSSRSSHSLSTHSTASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37424285 37428006 + evm.model.ptg000014l.186 HCH14g1022 558925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1022 458 SUPERFAMILY Ankyrin repeat 30 133 IPR036770 -
HCH14g1022 458 Pfam Protein tyrosine and serine/threonine kinase 161 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g1022 458 FunFam Integrin-linked protein kinase family 22 147 - -
HCH14g1022 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 64 410 IPR051681 GO:0004674(PANTHER)
HCH14g1022 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
HCH14g1022 458 ProSiteProfiles Protein kinase domain profile. 121 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1022 458 FunFam Os01g0748600 protein 142 429 - -
HCH14g1022 458 PIRSF ILK 1 432 - -
HCH14g1022 458 Gene3D - 32 141 IPR036770 -
HCH14g1022 458 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
HCH14g1022 458 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
HCH14g1022 458 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
HCH14g1022 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515(InterPro)
HCH14g1022 458 SUPERFAMILY Protein kinase-like (PK-like) 165 413 IPR011009 -
HCH14g1022 458 Gene3D Transferase(Phosphotransferase) domain 1 232 455 - -
HCH14g1022 458 CDD STKc_MAP3K-like 162 409 - -
HCH14g1022 458 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
HCH14g1022 458 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
HCH14g1022 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1022 HCH-Chr14:37424285 HCH2g0899 HCH-Chr2:52483724 1.00E-143 dispersed
HCH14g1022 HCH-Chr14:37424285 HCH3g0742 HCH-Chr3:5357484 4.30E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81256 PF07714 PK_Tyr_Ser-Thr 1.80E-54 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1022 - - - 0.0