Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1023 ATGTCAGACTCACCACAGAGAAAGATGGGTAGGGGAAAGATTGAGATTAAGAGGATCGAAAACACGACGAATCGCCAAGTTACTTTCTGTAAGAGACGCAATGGGTTGCTCAAAAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTCGTCGTCTTCTCGAGCCGTGGCCGCCTTTATGAGTATGCTAATAACAGTGTGAAGGGAACAATTGAGAGATACAAAAAGGCATCATCAGATTCCTCCAACACTGGGTCTACTTCTGAAGCTAATACTCAGTTTTATCAGCAAGAAGCTGCCAAACTCCGTGTCCAGATTGGAAATTTGCAGAACTCAAACAGGAACATGTTGGGTGAGTCAATAAGTTCTTTGAGTGTAAAAGATTTGAAAAGCCTGGAGGGTAAATTAGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGAACGAACTCCTCTTTGATGAGATTGAGTATATGAGGAAAAGGGAAATTGATCTGCACAACAATAACCAGCTGCTTAGAGCAAAGATAACTGAGAATGAAAGGAATGTGAATGCGAATGTGAATATGATGGGAGGAGAATTTGAGCTGATGCAAACAAGTCATCAATATGATCCACGAGACTTTTTCCAAGTGAATGGTTTACAACATAATCATCAGTATCCACGCCAAGACAACATGCCTCTTCAATTAGTATAA 705 40.57 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVKGTIERYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESISSLSVKDLKSLEGKLEKGISRIRSKKNELLFDEIEYMRKREIDLHNNNQLLRAKITENERNVNANVNMMGGEFELMQTSHQYDPRDFFQVNGLQHNHQYPRQDNMPLQLV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37434694 37439843 + evm.model.ptg000014l.185 HCH14g1023 558926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1023 234 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 Coils Coil 132 152 - -
HCH14g1023 234 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 200 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH14g1023 234 FunFam agamous-like MADS-box protein AGL11 21 104 - -
HCH14g1023 234 Pfam K-box region 91 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH14g1023 234 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 Gene3D - 21 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH14g1023 234 SMART madsneu2 9 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1023 234 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0954 HCH-Chr11:40940819 HCH14g1023 HCH-Chr14:37434694 5.10E-12 dispersed
HCH12g1552 HCH-Chr12:42152654 HCH14g1023 HCH-Chr14:37434694 4.40E-71 dispersed
HCH14g0430 HCH-Chr14:33325126 HCH14g1023 HCH-Chr14:37434694 2.80E-35 dispersed
HCH14g1023 HCH-Chr14:37434694 HCH9g0327 HCH-Chr9:2041713 1.30E-36 dispersed
HCH3g0454 HCH-Chr3:2878345 HCH14g1023 HCH-Chr14:37434694 1.90E-33 transposed
HCH14g1023 HCH-Chr14:37434694 HCH3g0743 HCH-Chr3:5370503 4.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33002 PF01486 K-box 5.50E-28 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1023 K09264 - csv:101221430 408.683