Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1043 ATGGAGAAAGAGCCTCTTCTTCCATTTCTAAGCCCAAGAGAAAAGACCCATCTTTGTCCTCTCCCTGAAAATGATGAAATCATTCTTCCTTTAACTCCTACTGAATTCAAAGACCGTTTAATCTTTGGCCCTTCTGCTTCCCCACAAGACCCTTCTCCCCTTTTTGATTCTTTAACTCTTTCTCGTCCCTCTGCTTCTTCTTCTTCTTCTTCTCTCCATGACCCAGTTTCCCATTTTGACCCGAAATCTCAATCTCAATCTCAATCCCCTCAAGCTTGGCTTATTGATCCCAATTATTCTTGGACTAAATCCAATCTCCATCGCTCTAAAACCGCACCCGCTATGGCGGTTATTAACGACGTTAATCATCGAAACGAGCCTAAGCCACAGTTTGGTAATCAATCTATTGTTCGTCAAGGTTTTATTCTTTTGATTGTTTACTTGTCATTGGGTGTGCTTATCTATTGGATTAATCGTGATCATTTTTCGGCTACCGAAACTCATCCTGTTGTTGATGCATTGTACTTTTGTATTGTCACAATGTGCACTATTGGTTATGGTGATATTACGCCGAATAGCACGGCGACAAAGCTATTTTCGGTGTTGTTTGTGTTGGTGGGCTTCGGGTTTATCGATATATTGCTCACGGGAATGGTTAGTTATGTGCTTGATTTGCAAGAGAGCTATTTGTTGAAGAATGTAAAAAGGGGAGTTAGGAATGAGACCGGGAAATCGTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCTTTAGGTGTTGTGGTACTATGTATTGGAGTTGGCATGGGTTTTATGCATTTTGTTGAGAAGCTTGGGTGGGTGGATTCATTTTATCTTTCAGTCATGTCAGTGACTACGGTTGGATATGGAGATCGGGCATTCAATTCATTGACTGGTCGAATTTTCGCTTCAATCTGGTTGCTTGTATCGACCCTTGCTGTTGCTCGGGCATTTCTTTATTTAGCTGAGGCAAGGGTGGATAAGCGGCACAGGATGATGGCTAAATGGGTACTTGGTCAGGATATGACTGTCTCGGAGTTTCTTGCTGCTGACATTGACAACAATGGCTTTGTGAGTAAGTCGGAGTATGTGATATACAAGCTCAAGGAGATGGGTAAAGTATTAGAGAAGGATATCATGCAGATCTCTAATAACTTTGATAGGCTAGACACTGGAAACTGTGGAAAGATTACACTTGCTGATCTCTTGGAGGCCCATCACTGA 1266 41.71 MEKEPLLPFLSPREKTHLCPLPENDEIILPLTPTEFKDRLIFGPSASPQDPSPLFDSLTLSRPSASSSSSSLHDPVSHFDPKSQSQSQSPQAWLIDPNYSWTKSNLHRSKTAPAMAVINDVNHRNEPKPQFGNQSIVRQGFILLIVYLSLGVLIYWINRDHFSATETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSVLFVLVGFGFIDILLTGMVSYVLDLQESYLLKNVKRGVRNETGKSYIIDVKKGRMRIRMKVALALGVVVLCIGVGMGFMHFVEKLGWVDSFYLSVMSVTTVGYGDRAFNSLTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWVLGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVLEKDIMQISNNFDRLDTGNCGKITLADLLEAHH 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37562885 37565695 + evm.model.ptg000014l.165 HCH14g1043 558946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1043 421 SUPERFAMILY Voltage-gated potassium channels 138 222 - -
HCH14g1043 421 PRINTS Two pore domain K+ channel signature 179 207 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH14g1043 421 PRINTS Two pore domain K+ channel signature 299 308 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH14g1043 421 FunFam Two-pore potassium channel 5 125 235 - -
HCH14g1043 421 SUPERFAMILY EF-hand 353 419 IPR011992 -
HCH14g1043 421 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 142 368 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
HCH14g1043 421 MobiDBLite consensus disorder prediction 66 90 - -
HCH14g1043 421 ProSitePatterns EF-hand calcium-binding domain. 365 377 IPR018247 -
HCH14g1043 421 Gene3D - 331 421 - -
HCH14g1043 421 Gene3D - 265 330 - -
HCH14g1043 421 SUPERFAMILY Voltage-gated potassium channels 251 358 - -
HCH14g1043 421 Pfam Ion channel 267 337 IPR013099 -
HCH14g1043 421 Pfam Ion channel 142 222 IPR013099 -
HCH14g1043 421 Gene3D - 134 234 - -
HCH14g1043 421 FunFam Two-pore potassium channel 3 244 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1043 HCH-Chr14:37562885 HCH3g1019 HCH-Chr3:13636353 4.50E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1043 K05389 - csv:101220017 696.041