Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g1043 | ATGGAGAAAGAGCCTCTTCTTCCATTTCTAAGCCCAAGAGAAAAGACCCATCTTTGTCCTCTCCCTGAAAATGATGAAATCATTCTTCCTTTAACTCCTACTGAATTCAAAGACCGTTTAATCTTTGGCCCTTCTGCTTCCCCACAAGACCCTTCTCCCCTTTTTGATTCTTTAACTCTTTCTCGTCCCTCTGCTTCTTCTTCTTCTTCTTCTCTCCATGACCCAGTTTCCCATTTTGACCCGAAATCTCAATCTCAATCTCAATCCCCTCAAGCTTGGCTTATTGATCCCAATTATTCTTGGACTAAATCCAATCTCCATCGCTCTAAAACCGCACCCGCTATGGCGGTTATTAACGACGTTAATCATCGAAACGAGCCTAAGCCACAGTTTGGTAATCAATCTATTGTTCGTCAAGGTTTTATTCTTTTGATTGTTTACTTGTCATTGGGTGTGCTTATCTATTGGATTAATCGTGATCATTTTTCGGCTACCGAAACTCATCCTGTTGTTGATGCATTGTACTTTTGTATTGTCACAATGTGCACTATTGGTTATGGTGATATTACGCCGAATAGCACGGCGACAAAGCTATTTTCGGTGTTGTTTGTGTTGGTGGGCTTCGGGTTTATCGATATATTGCTCACGGGAATGGTTAGTTATGTGCTTGATTTGCAAGAGAGCTATTTGTTGAAGAATGTAAAAAGGGGAGTTAGGAATGAGACCGGGAAATCGTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCTTTAGGTGTTGTGGTACTATGTATTGGAGTTGGCATGGGTTTTATGCATTTTGTTGAGAAGCTTGGGTGGGTGGATTCATTTTATCTTTCAGTCATGTCAGTGACTACGGTTGGATATGGAGATCGGGCATTCAATTCATTGACTGGTCGAATTTTCGCTTCAATCTGGTTGCTTGTATCGACCCTTGCTGTTGCTCGGGCATTTCTTTATTTAGCTGAGGCAAGGGTGGATAAGCGGCACAGGATGATGGCTAAATGGGTACTTGGTCAGGATATGACTGTCTCGGAGTTTCTTGCTGCTGACATTGACAACAATGGCTTTGTGAGTAAGTCGGAGTATGTGATATACAAGCTCAAGGAGATGGGTAAAGTATTAGAGAAGGATATCATGCAGATCTCTAATAACTTTGATAGGCTAGACACTGGAAACTGTGGAAAGATTACACTTGCTGATCTCTTGGAGGCCCATCACTGA | 1266 | 41.71 | MEKEPLLPFLSPREKTHLCPLPENDEIILPLTPTEFKDRLIFGPSASPQDPSPLFDSLTLSRPSASSSSSSLHDPVSHFDPKSQSQSQSPQAWLIDPNYSWTKSNLHRSKTAPAMAVINDVNHRNEPKPQFGNQSIVRQGFILLIVYLSLGVLIYWINRDHFSATETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSVLFVLVGFGFIDILLTGMVSYVLDLQESYLLKNVKRGVRNETGKSYIIDVKKGRMRIRMKVALALGVVVLCIGVGMGFMHFVEKLGWVDSFYLSVMSVTTVGYGDRAFNSLTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWVLGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVLEKDIMQISNNFDRLDTGNCGKITLADLLEAHH | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 37562885 | 37565695 | + | evm.model.ptg000014l.165 | HCH14g1043 | 558946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g1043 | 421 | SUPERFAMILY | Voltage-gated potassium channels | 138 | 222 | - | - | |
HCH14g1043 | 421 | PRINTS | Two pore domain K+ channel signature | 179 | 207 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
HCH14g1043 | 421 | PRINTS | Two pore domain K+ channel signature | 299 | 308 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
HCH14g1043 | 421 | FunFam | Two-pore potassium channel 5 | 125 | 235 | - | - | |
HCH14g1043 | 421 | SUPERFAMILY | EF-hand | 353 | 419 | IPR011992 | - | |
HCH14g1043 | 421 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 142 | 368 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) | |
HCH14g1043 | 421 | MobiDBLite | consensus disorder prediction | 66 | 90 | - | - | |
HCH14g1043 | 421 | ProSitePatterns | EF-hand calcium-binding domain. | 365 | 377 | IPR018247 | - | |
HCH14g1043 | 421 | Gene3D | - | 331 | 421 | - | - | |
HCH14g1043 | 421 | Gene3D | - | 265 | 330 | - | - | |
HCH14g1043 | 421 | SUPERFAMILY | Voltage-gated potassium channels | 251 | 358 | - | - | |
HCH14g1043 | 421 | Pfam | Ion channel | 267 | 337 | IPR013099 | - | |
HCH14g1043 | 421 | Pfam | Ion channel | 142 | 222 | IPR013099 | - | |
HCH14g1043 | 421 | Gene3D | - | 134 | 234 | - | - | |
HCH14g1043 | 421 | FunFam | Two-pore potassium channel 3 | 244 | 358 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g1043 | HCH-Chr14:37562885 | HCH3g1019 | HCH-Chr3:13636353 | 4.50E-53 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g1043 | K05389 | - | csv:101220017 | 696.041 |