Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1044 ATGTCTGATGATTTCAAAGACTTTTGTTTCTCAAACCCTTTTAGAGAAGATAAACAAAAACTATATTCCATTTCTACTGGTTCATCAGTTTATAATAATAATCTCCAAGGGGTTGACTTTGAATCAGAAGCTATGGATTATGACTCTCTAGCCAAAGCCTTTGGGTTATCACCCTCTTCTGATGAAGTCTTTTCATCCATTGATCAAGCTAATCATGTTATTGCTAATAATGAAATTTCAGGAACCCCAAATTCTTCTGCTTCTTTCTCCTCTACTGAGGCTGGTGCTGAAGAAGATTCTGATAAACATGAGCCTAGAGAGATGGAAGATGGAGGAGAGAGCTCGAAGGACGTGAAGAGATCAAAAAAGAAAGAAGAGAAAAAGGAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGAAGTTGATCATCTAGAAGATGGATATAGATGGAGAAAATATGGACAAAAAGCTGTCAAAAATAGCGCTTATCCAAGAAGCTACTACAGATGCACGACTCAGAAATGCGGGGTGAAGAAACGGGTGGAGAGGTCGTATGAAGATCCGGCCATCGTGATAACGACGTACGAAGGCCAGCACAACCACCCACTTCCGGCAACTCTAAGAGGAAATCTCTCGGCAGCCGCCACGTTTCCGCCGTCCATGCTCACGCCAATGCCGGTGGTCAATCATGGCGGTTATCTTCCAGAATTGTTTAGTAATACTAATACACCGACGAATAATAATTACCAAGTCGGTGGCAGCGGCGGCGGTTCTTCAGGCGGCTCGGTTTATTCACAAAGCGGTCTCATTAGCTACCCTTACCAACAGCCGGATTATGGACTTTTGCAAGACATTTTTTCAGCTTCCTCGTTTTTGAACCGGCAGCCGTAG 894 43.18 MSDDFKDFCFSNPFREDKQKLYSISTGSSVYNNNLQGVDFESEAMDYDSLAKAFGLSPSSDEVFSSIDQANHVIANNEISGTPNSSASFSSTEAGAEEDSDKHEPREMEDGGESSKDVKRSKKKEEKKEREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPAIVITTYEGQHNHPLPATLRGNLSAAATFPPSMLTPMPVVNHGGYLPELFSNTNTPTNNNYQVGGSGGGSSGGSVYSQSGLISYPYQQPDYGLLQDIFSASSFLNRQP 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37573823 37575783 + evm.model.ptg000014l.164 HCH14g1044 558947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1044 297 MobiDBLite consensus disorder prediction 95 132 - -
HCH14g1044 297 ProSiteProfiles WRKY domain profile. 140 205 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g1044 297 SMART WRKY_cls 145 204 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g1044 297 SUPERFAMILY WRKY DNA-binding domain 137 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g1044 297 FunFam WRKY transcription factor 57 131 205 - -
HCH14g1044 297 Gene3D WRKY domain 130 206 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g1044 297 MobiDBLite consensus disorder prediction 77 94 - -
HCH14g1044 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 213 IPR044810 GO:0003700(InterPro)
HCH14g1044 297 Pfam WRKY DNA -binding domain 146 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH14g1044 297 MobiDBLite consensus disorder prediction 77 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1044 HCH-Chr14:37573823 HCH7g0047 HCH-Chr7:332760 5.70E-42 dispersed
HCH14g1044 HCH-Chr14:37573823 HCH2g0990 HCH-Chr2:53176155 2.30E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33003 PF03106 WRKY 2.20E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1044 - - - 0.0