Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1047 ATGGCTGCTTCTACAATGGCTCTTTCCTCTCCCTCTTTTGCCGGCAAGGCAGTTAAGCTCTCTCCTTCGGCCCCTGAGCTCCAGGGAAATGGAAGAGTCAGCATGAGGAAAACTGCCTCTAAATCAGTTTCTTCCGGCAGCCCATGGTACGGTCCCGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGCCACCATCCTACCTCACTGGAGAATTCCCCGGTGACTACGGCTGGGACACCGCTGGACTCTCCGCCGATCCCGAGACTTTCGCCAAGAACCGTGAACTCGAGGTGATCCACTCTAGATGGGCCATGCTTGGAGCTCTAGGCATTGTCTTCCCTGAGCTTTTGTCCCGCAATGGTGTGAAGTTTGGTGAGGCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCAGTGAGGGTGGCCTTGACTATTTGGGAAACCCAAGCTTGATCCATGCTCAAAGCATTTTGGCTATTTGGGCAAGTCAAGTTGTCTTGATGGGTGCTGTTGAGGGTTACCGTATTGCAGGTGGTCCACTTGGTGAGGTGACTGACCCGATCTACCCGGGTGGAAGCTTCGACCCGTTGGGTCTTGCCGATGACCCCGAAGCTTTTGCAGAATTGAAGGTGAAGGAGCTCAAGAATGGAAGATTGGCTATGTTCTCCGTGTTTGGATTCTTCGTTCAAGCCATTGTAACTGGAAAGGGTCCATTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACCAACTTTGTTCCTGGAAAATGA 798 52.13 MAASTMALSSPSFAGKAVKLSPSAPELQGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGIVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37596112 37596909 - evm.model.ptg000014l.161 HCH14g1047 558950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1047 265 MobiDBLite consensus disorder prediction 21 46 - -
HCH14g1047 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
HCH14g1047 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH14g1047 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
HCH14g1047 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
HCH14g1047 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1047 HCH-Chr14:37596112 HCH3g0785 HCH-Chr3:5738655 3.40E-147 dispersed
HCH14g1047 HCH-Chr14:37596112 HCH14g1048 HCH-Chr14:37598687 6.00E-152 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1047 K08912 - rcu:8289767 526.554