Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1049 ATGGCTTCTTGTATTAGTTTAGCCATATTCATAGTATCTAGTTTTGTTCTTGTTAAGTTTCTATTTGCTCAACCACAATTGACAATGGAAAAAGTTGAACTTGAAGCCTTGAAAGCCTTCAAGAGCTCCATCCATTTGGACCCATTGGGAGTATTTGCAGATTGGACAGATCTAAATCATCATTGCAATTGGTCTGGCATTGTATGTGATTCTGTTTTCAATCATGTTGTTTCGATTTCTTTCGTTGATAAGCGGCTTAAAGGCGAGATTTCTCCGTTTATCGGGAACCTTTCAGCTCTAAAAGTTCTAGATTTAACTCAGAATTTCTTTACTGGGAAGATTCCAGGTGAGTTGAGTTTGTGTTCAAAGCTTTCTGAACTTATCCTTTACAAGAATCTTCTTTCTGGTCAAATTCCATCACAATTTGGAAAATTTGGAAATCTAGAATCATTGGATTTAGGAGAGAACTTTTTGAATGGAAGCATTCCTGATAGTATTTGCAATTGCACAAATTTGTTAGAGTTTGGTGTGGTATTCAACAATCTCACAGGCACAATCCCTTCAAAGATAGGAAACTTGGTGAATCTTCAACTTTTGGTAGCATATGGCAACAAATTAGAAGGTTCCATTCCTATCTCAATTGGAAAATTAGAGGCTCTCAAAGCTTTAGATTTTAGCCAAAACCGATTATCTGGGAATGTGCCTGTGGAGATTGGGAATTTGTTGAACTTGGAGTATCTCTTATTGTTTGAGAATTTTTTTGTGGGGAAAATTCCAGCTGAGATAGGTAAATGTAAGAAACTTGTTTCTATTGAACTATACAATAATGAGTTCAGTGGTGGCATTCCTTCACAGCTAGGCTTTCTGATTCACTTACAAACGTTGCGTTTATATAAAAATAAGTTCGATTCTACTGTGCCCCAATCTCTCTTTCACTTGAAAGGTTTGACACATTTGCTTATCTCAGAGAATGAGTTAAATGGAACTATATCTTCCGATATCGGGTCCTTGACATCGTTACAGGTATTGACACTGCACTCAAATAGGTTTTCTGGGGTGATTCCTTCATCTTTGACAAACTTGACAAATTTGACATATTTATCTCTGAGCTTCAATTCATTCACAGGAGAGCTTCCATCCAATATAGGCTTTCTTCATAACATTGAGAAATTGGCATTGAACAACAATCTTTTTGAGGGATTAATTCCATCAAGTATTGCCAATTGCACTCAGCTTTCTATTATTGGTCTTGCATATAATCAGCTGACAGGGAAAATACCTTCTGGTTTTGGGAAGTTACAAAATCTTACTTCTCTCCTTCTTGGAGATAATAAGATGTTTGGTGAAATCCCAGATGATCTCTATAATTGCTCATCTCTTGATGTTGTAGATTTGGCTATAAACCATTTCACTGGATTGCTAAAACCTGGCATTGGCAAGCTTTCTAATATCCAAGTTTTCAGAGCCTCATCAAATTCATTTTCTGGGAAAATTTCAAGGGATATTGGCAACTTAAGCAGACTTGTCACATTAGCACTTGCCGAGAATAATTTTTCGGGTTCGATTCCTGTGGACTTATCTAAGCTTTCTCTTCTTCAAGCCCTTTCTTTGCATGACAATGCATTAGGAGGAGTGATTCCAGAGAAAATATTTGATCTGAAAAGGCTGAGTCTCCTTTATTTGCAGAACAACAAGCTCTCAGGTTTAATTCCAAATGCCATCTCAAAACTAGAGTTTCTTTCACATTTGGACCTTCATGGTAACATGCTTAATGGATCCATTCCTAAAAGTATGAGGAATCTCGACCGACTTGATATGTTAGATCTATCTCACAACCATCTATCTGGATCAATTCCTGAGACTTTTGTAGCAGGTATGAAAAATATGCAGATTTATATGAACTTGTCATACAATTTCCTGGTAGGAAGTATTCCAAATGAGCTTGGGTTGTTACAAATGATACAATCCATTGACTTCTCAAACAACAATCTCACCGGGAATATTCCAGAGGCAATTGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATGAACTTTCTGGTATGCTTCCAGGGAAAGCTTTTATCGAAACGGATATGCTCGCAAGCTTGAACCTTTCAAGGAACAGAATAGTTGGTGAAATCCCAGAATACTTAGCAAATCTGAAGCACTTATACTCTTTAGACCTTTCTCAGAATCAGTTGAATGGTAGCATCCCTCAAAACTTAGCAAAACTTTCAGCTCTGAAGTATATCAACCTTTCTTTCAATCAACTTGAAGGCCTTGTTCCAGATACTGGAGTATTTCGAAGAATTAATGCATCCAGATTGATAGGAAATCCTGCTCTTTGTGGTTCTGGTTTCTTTCCTCCTTGTGGAAAGAAAGATCTGTGGCATCTTTCCAAAAAGGCAATATCAATTCTCATCACCCTTGCATCTCTTATTATAATTTTAGCTATCATTTCCTTAATTATAGTCCTCAACCGATATCGTAAAGTTGAAAAATCTGGAATTGTTGAGAATCCTGAACCAACATTTGTTCATACATCCACCCTTAAAAGGTTTGATAAGAAGGATTTGGAGATTGCTACAGAATACTTCAACGAAAACAACATTATCGGTTCCAGTTCTTTAAGCACCGTGTACAAGGGTCAACTTGAAAATGGACAGATTGTAGCCGTAAAGAGACTGAATTTGCATCAATTCTCTGCAGAATCAGATAAGTACTTCAATAGAGAAATCAAGATTCTTAGTCAGCTTAGACATAGGAATTTGGTGAAAGTACTAGGATATGCTTGGGAAAGCCAGAAACTGAAGGCTATTGTACTTGAATACATGGAAAATGGGAACTTGGAAAGAATAATACACAATCCTGGAACAGATCAACCAAGCTGGACATTGTCAAAGAGAGTTGATATTTGTGTTTCTGTTGCTAGTGGAATGCAATACTTGCATTATGGATATGATTTTCCCATCATTCACTGTGACTTGAAACCTTCTAACATCCTTCTAGACGGAGACTGGACCGCTCATGTGAGCGATTTTGGAACAGCTAGAGTGTTGGGGGTGCAAAGCCAAGATACAAACAGCATTTCCTCTTCATCGGCTTTCGAGGGCACTATCGGATATCTGGCTCCAGAGTTTGCATACATGGGAAAAGTCACAACCCAAGTCGACGTATTCAGTTTCGGCGTAATACTGATGGAATTTCTGACAAAGAAAAGGCCAACTGCAATCACTGAAGCTAATGAACTCCCATTCAGTTTGCAACAACTTGTGGAGAGAGCTCTAGCAAGTGGAATGGAAAGAGGGATTGTTCAAGTTTTGGATCCCGTGCTGGTTTCGAATGCTTTGAAGGAGCGAAAGAAGATAGAAAAACTACTCAAACTTGCATTGTGTTGTACCAATCAAAATCCAGATGATAGACCTGACATGAATGAAGTTCTGTCTACCCTCTTGAAGCTGCAGGGGAATGAACAGCAGAGCTAA 3495 37.91 MASCISLAIFIVSSFVLVKFLFAQPQLTMEKVELEALKAFKSSIHLDPLGVFADWTDLNHHCNWSGIVCDSVFNHVVSISFVDKRLKGEISPFIGNLSALKVLDLTQNFFTGKIPGELSLCSKLSELILYKNLLSGQIPSQFGKFGNLESLDLGENFLNGSIPDSICNCTNLLEFGVVFNNLTGTIPSKIGNLVNLQLLVAYGNKLEGSIPISIGKLEALKALDFSQNRLSGNVPVEIGNLLNLEYLLLFENFFVGKIPAEIGKCKKLVSIELYNNEFSGGIPSQLGFLIHLQTLRLYKNKFDSTVPQSLFHLKGLTHLLISENELNGTISSDIGSLTSLQVLTLHSNRFSGVIPSSLTNLTNLTYLSLSFNSFTGELPSNIGFLHNIEKLALNNNLFEGLIPSSIANCTQLSIIGLAYNQLTGKIPSGFGKLQNLTSLLLGDNKMFGEIPDDLYNCSSLDVVDLAINHFTGLLKPGIGKLSNIQVFRASSNSFSGKISRDIGNLSRLVTLALAENNFSGSIPVDLSKLSLLQALSLHDNALGGVIPEKIFDLKRLSLLYLQNNKLSGLIPNAISKLEFLSHLDLHGNMLNGSIPKSMRNLDRLDMLDLSHNHLSGSIPETFVAGMKNMQIYMNLSYNFLVGSIPNELGLLQMIQSIDFSNNNLTGNIPEAIGGCRNLFFLDLSGNELSGMLPGKAFIETDMLASLNLSRNRIVGEIPEYLANLKHLYSLDLSQNQLNGSIPQNLAKLSALKYINLSFNQLEGLVPDTGVFRRINASRLIGNPALCGSGFFPPCGKKDLWHLSKKAISILITLASLIIILAIISLIIVLNRYRKVEKSGIVENPEPTFVHTSTLKRFDKKDLEIATEYFNENNIIGSSSLSTVYKGQLENGQIVAVKRLNLHQFSAESDKYFNREIKILSQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLERIIHNPGTDQPSWTLSKRVDICVSVASGMQYLHYGYDFPIIHCDLKPSNILLDGDWTAHVSDFGTARVLGVQSQDTNSISSSSAFEGTIGYLAPEFAYMGKVTTQVDVFSFGVILMEFLTKKRPTAITEANELPFSLQQLVERALASGMERGIVQVLDPVLVSNALKERKKIEKLLKLALCCTNQNPDDRPDMNEVLSTLLKLQGNEQQS 1164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37600258 37604031 - evm.model.ptg000014l.159 HCH14g1049 558952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1049 1164 Gene3D Phosphorylase Kinase; domain 1 841 947 - -
HCH14g1049 1164 Gene3D Ribonuclease Inhibitor 141 233 IPR032675 -
HCH14g1049 1164 SUPERFAMILY L domain-like 55 234 - -
HCH14g1049 1164 Gene3D Ribonuclease Inhibitor 234 325 IPR032675 -
HCH14g1049 1164 Gene3D Ribonuclease Inhibitor 326 427 IPR032675 -
HCH14g1049 1164 ProSiteProfiles Protein kinase domain profile. 869 1157 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1049 1164 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
HCH14g1049 1164 PRINTS Leucine-rich repeat signature 724 737 - -
HCH14g1049 1164 PRINTS Leucine-rich repeat signature 604 617 - -
HCH14g1049 1164 FunFam Leucine-rich repeat receptor-like protein kinase TDR 358 627 - -
HCH14g1049 1164 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 628 798 - -
HCH14g1049 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 948 1162 - -
HCH14g1049 1164 Pfam Protein kinase domain 870 1152 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1049 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 30 184 - -
HCH14g1049 1164 SUPERFAMILY RNI-like 186 495 - -
HCH14g1049 1164 Gene3D Transferase(Phosphotransferase) domain 1 948 1164 - -
HCH14g1049 1164 Pfam Leucine rich repeat 703 761 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Pfam Leucine rich repeat 387 445 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Gene3D Ribonuclease Inhibitor 32 140 IPR032675 -
HCH14g1049 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g1049 1164 Gene3D Ribonuclease Inhibitor 428 523 IPR032675 -
HCH14g1049 1164 Gene3D Ribonuclease Inhibitor 524 631 IPR032675 -
HCH14g1049 1164 SMART serkin_6 869 1155 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1049 1164 Gene3D Ribonuclease Inhibitor 632 800 IPR032675 -
HCH14g1049 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 829 947 - -
HCH14g1049 1164 SUPERFAMILY Protein kinase-like (PK-like) 846 1154 IPR011009 -
HCH14g1049 1164 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 185 284 - -
HCH14g1049 1164 CDD STKc_IRAK 875 1157 - -
HCH14g1049 1164 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 700 1157 IPR050647 -
HCH14g1049 1164 Pfam Leucine Rich Repeat 654 675 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Pfam Leucine Rich Repeat 363 385 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Pfam Leucine Rich Repeat 339 361 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 Pfam Leucine Rich Repeat 100 119 IPR001611 GO:0005515(InterPro)
HCH14g1049 1164 SUPERFAMILY RNI-like 450 763 - -
HCH14g1049 1164 SMART LRR_typ_2 553 576 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 289 313 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 601 624 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 97 121 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 433 457 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 577 600 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 651 675 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 505 529 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 145 169 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 748 771 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 724 747 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 217 241 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 361 385 IPR003591 -
HCH14g1049 1164 SMART LRR_typ_2 337 360 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1049 HCH-Chr14:37600258 HCH3g0719 HCH-Chr3:5165275 7.30E-53 dispersed
HCH14g1049 HCH-Chr14:37600258 HCH3g0718 HCH-Chr3:5151688 1.10E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81257 PF00069 Pkinase 8.90E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1049 K13420 - csv:101215973 1652.11