Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH14g1052 | ATGGCGGGACTGAGAAAACTCGCGCAATTAAAACCCATAGTTGAAGAAGCATTATCTGGAACTGTTTTCGTAGCGAAATTTCTTTGCGGCCTACATCTCACCAATACTTACCTCTGCACCGCCGCTCTTACTTACGGTCCCAGTATGCTCCCTACTTTGAATTTAACTGGTGATTTCATTTTGGCTGAAAGAATCTCCACTCGTTTTGGCAAAGTGGGAATTGGAGATATTGTCTTAATTCGTTCTCCTGAGAATCCTCGCAAAGTTATGGCTAAGCGTTTGATGGGTTTGGAGGGTGATTTTGTTACTTATGTTGTGGATCCTAAGAACAGTGATAGGTGCGACACTATTGTGGTTCCTAAGGGACATGTTTGGATAGAAGGAGATAATATCTATGATTCTAATGATTCGAGACGTTTTGGGGCCGTACCGTATGGTCTTCTGCAAGGGAAAATATTCTGGAGGATATGGCCACCTAAGAGTTATGGACCATTGGATAAGCAAAAATCGAAAGAACCGGTCTTGTGA | 528 | 42.61 | MAGLRKLAQLKPIVEEALSGTVFVAKFLCGLHLTNTYLCTAALTYGPSMLPTLNLTGDFILAERISTRFGKVGIGDIVLIRSPENPRKVMAKRLMGLEGDFVTYVVDPKNSDRCDTIVVPKGHVWIEGDNIYDSNDSRRFGAVPYGLLQGKIFWRIWPPKSYGPLDKQKSKEPVL | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 37615465 | 37617032 | + | evm.model.ptg000014l.156 | HCH14g1052 | 558955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH14g1052 | 175 | CDD | S26_SPase_I | 46 | 152 | IPR019533 | GO:0004252(InterPro)|GO:0006465(InterPro) | |
HCH14g1052 | 175 | Gene3D | Umud Fragment, subunit A | 34 | 170 | - | - | |
HCH14g1052 | 175 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 90 | 102 | IPR000223 | GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro) | |
HCH14g1052 | 175 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 119 | 138 | IPR000223 | GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro) | |
HCH14g1052 | 175 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 37 | 53 | IPR000223 | GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro) | |
HCH14g1052 | 175 | FunFam | Inner membrane protease subunit 1 | 35 | 164 | - | - | |
HCH14g1052 | 175 | SUPERFAMILY | LexA/Signal peptidase | 36 | 165 | IPR036286 | - | |
HCH14g1052 | 175 | Pfam | Signal peptidase, peptidase S26 | 32 | 104 | IPR019533 | GO:0004252(InterPro)|GO:0006465(InterPro) | |
HCH14g1052 | 175 | Pfam | Signal peptidase, peptidase S26 | 113 | 157 | IPR019533 | GO:0004252(InterPro)|GO:0006465(InterPro) | |
HCH14g1052 | 175 | PANTHER | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED | 7 | 164 | IPR052064 | GO:0006627(PANTHER)|GO:0042720(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g1052 | HCH-Chr14:37615465 | HCH6g0611 | HCH-Chr6:36820068 | 3.40E-55 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH14g1052 | K09647 | - | csv:101209167 | 302.753 |