Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1052 ATGGCGGGACTGAGAAAACTCGCGCAATTAAAACCCATAGTTGAAGAAGCATTATCTGGAACTGTTTTCGTAGCGAAATTTCTTTGCGGCCTACATCTCACCAATACTTACCTCTGCACCGCCGCTCTTACTTACGGTCCCAGTATGCTCCCTACTTTGAATTTAACTGGTGATTTCATTTTGGCTGAAAGAATCTCCACTCGTTTTGGCAAAGTGGGAATTGGAGATATTGTCTTAATTCGTTCTCCTGAGAATCCTCGCAAAGTTATGGCTAAGCGTTTGATGGGTTTGGAGGGTGATTTTGTTACTTATGTTGTGGATCCTAAGAACAGTGATAGGTGCGACACTATTGTGGTTCCTAAGGGACATGTTTGGATAGAAGGAGATAATATCTATGATTCTAATGATTCGAGACGTTTTGGGGCCGTACCGTATGGTCTTCTGCAAGGGAAAATATTCTGGAGGATATGGCCACCTAAGAGTTATGGACCATTGGATAAGCAAAAATCGAAAGAACCGGTCTTGTGA 528 42.61 MAGLRKLAQLKPIVEEALSGTVFVAKFLCGLHLTNTYLCTAALTYGPSMLPTLNLTGDFILAERISTRFGKVGIGDIVLIRSPENPRKVMAKRLMGLEGDFVTYVVDPKNSDRCDTIVVPKGHVWIEGDNIYDSNDSRRFGAVPYGLLQGKIFWRIWPPKSYGPLDKQKSKEPVL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37615465 37617032 + evm.model.ptg000014l.156 HCH14g1052 558955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1052 175 CDD S26_SPase_I 46 152 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
HCH14g1052 175 Gene3D Umud Fragment, subunit A 34 170 - -
HCH14g1052 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
HCH14g1052 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
HCH14g1052 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
HCH14g1052 175 FunFam Inner membrane protease subunit 1 35 164 - -
HCH14g1052 175 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
HCH14g1052 175 Pfam Signal peptidase, peptidase S26 32 104 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
HCH14g1052 175 Pfam Signal peptidase, peptidase S26 113 157 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
HCH14g1052 175 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 164 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1052 HCH-Chr14:37615465 HCH6g0611 HCH-Chr6:36820068 3.40E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1052 K09647 - csv:101209167 302.753