Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1094 ATGTCTTCGACTTCGAGGTCAGCCAATGGTGGCAAGACACGTGTGGGGAAGTATGAGCTTGGTAGGACAATTGGGGAAGGGAACTTTGCTAAGGTTAAATTTGCTCGGAATTCGGAGACCGGCGAGAACGTGGCTATTAAAATTCTTGATAAAGAAAAACTTCTCAAGCATAAGATGATCGGGCAGATCAAACGTGAAATAGGAACAATGAAACTGATTAGACATCCAAATGTCATCCGCATGTATGAGGTGATGGCCAGCAAGACCAAGATATATATTGTTTTAGAATTTGTAACCGGAGGAGAACTGTTTGACAAAATTGCAAGTAAGGGGAGATTGAAAGAGGATGAGGCGAGAAAGTATTTTCAGCAGCTCATTAATGCAGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCTAGAGAATTTATTACTGGATGCTAGTGGCGTTCTTAAAGTATCCGATTTTGGATTGAGTGCTCTACCTCAGCAAGTTCGAGAAGATGGATTGCTTCATACAACATGTGGAACGCCTAATTATGTTGCTCCAGAGGTTATCAACAACAAAGGCTATGTTGGAGCTAAGGCAGACCTATGGTCGTGTGGGGTTATTCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAATCTAACCTTACGGCACTATATAAAAAGATTTTTAAGGCTGACTTCACCTGTCCTTCGTGGTTCTCAACTAATGCAAAGAAATTAATCAAGAGAATCTTGGATCCAAATCCATCAACTCGAATTACAATTGCTGAGGTCCTTGAGAATGAGTGGTTTAAGAAAGGATACAAGGCACCCACTTTTGAAAGTGCTGATGTCGATCATCTTGATGATATTGACTCCATCTTCAATGAATTAGGGGATTCTTGTAGCCTTGTTGTTGAGAGGAGAGAAGAACGCCCTGGGTCACCTGTCACCATGAATGCGTTTGAACTCATCTCAAAATCTCAGGGTCTCAACCTGGCTTCTCTTTTTGAAAAGCAAATGGGGTTAATCAAACGTGAAACGAGATTCACATCAAATTGTCCTGCAGATGAGATTATTGCTAAGATCGAGAAGGCTGCAGTTCCTCTGGGCTTTGATGTGAAGAAAAATAACTTCAAGATGAAGCTTCAAGGGGAAAAGACTGGACGTAAAGGTCATTTATCAGTTGCAACAGAGATTTTACAGGTTGCTCCTTCACTCTACATTGTCGAGCTGCGGAAAGCGGGAGGAGATACTTTAGAATTTCACGATTTCTACAGTAACCTCTCAACTGGACTGAAGGATATTGTATGGAGGCATGGAGACGGGTTGGGGAAGGAAACTAATGGCCCTGGTGGTGTAATTTCTAGGCCATTGGCTATCTGA 1392 41.88 MSSTSRSANGGKTRVGKYELGRTIGEGNFAKVKFARNSETGENVAIKILDKEKLLKHKMIGQIKREIGTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRGVFHRDLKLENLLLDASGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYVGAKADLWSCGVILFVLMAGYLPFEESNLTALYKKIFKADFTCPSWFSTNAKKLIKRILDPNPSTRITIAEVLENEWFKKGYKAPTFESADVDHLDDIDSIFNELGDSCSLVVERREERPGSPVTMNAFELISKSQGLNLASLFEKQMGLIKRETRFTSNCPADEIIAKIEKAAVPLGFDVKKNNFKMKLQGEKTGRKGHLSVATEILQVAPSLYIVELRKAGGDTLEFHDFYSNLSTGLKDIVWRHGDGLGKETNGPGGVISRPLAI 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37877312 37881832 + evm.model.ptg000014l.114 HCH14g1094 558997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1094 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g1094 463 FunFam Non-specific serine/threonine protein kinase 11 315 - -
HCH14g1094 463 Gene3D Transferase(Phosphotransferase) domain 1 11 319 - -
HCH14g1094 463 Gene3D Kinase associated domain 1, KA1 320 441 - -
HCH14g1094 463 CDD CIPK_C 322 437 - -
HCH14g1094 463 CDD STKc_SnRK3 17 272 - -
HCH14g1094 463 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
HCH14g1094 463 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1094 463 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1094 463 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1094 463 FunFam Non-specific serine/threonine protein kinase 9 97 - -
HCH14g1094 463 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165(InterPro)
HCH14g1094 463 FunFam Non-specific serine/threonine protein kinase 315 441 - -
HCH14g1094 463 Pfam NAF domain 318 378 IPR004041 GO:0007165(InterPro)
HCH14g1094 463 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
HCH14g1094 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 425 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1094 HCH-Chr14:37877312 HCH2g1466 HCH-Chr2:56197623 2.30E-175 dispersed
HCH14g1094 HCH-Chr14:37877312 HCH3g0829 HCH-Chr3:6240969 4.70E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81258 PF00069 Pkinase 9.80E-75 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1094 - - - 0.0