Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1100 ATGAGGCTTTCTACTCCTGGTTTTAGTCCTCAAGCCCCAGAAGGGGAGAGGAGGGTTCTAAATTCTGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTCTCTCTACCTGCTGTTGGAAGTCGGGCTGTTTATTTTGCACAAGGTCACAGTGAGCAGGTTGCCATATCAACCAACAAAGAAGTGGATGCTCATATACCTAGTTATCCAAGCTTGCCACCACAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACGGATGAAGTATATGCGCAGATGACCTTGCAACCGCTCAATCCGCAAGAGCAAAAGGAGCCCTATCTTCCAGCTGAGTTGGGTGCCCCTAGCAAACAACCAACCAATTATTTTTGCAAAACATTGACAGCAAGTGACACAAGTACACATGGGGGATTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTGTTTCCTCCACTGGACTTCTCTCAGCAACCCCCTGCTCAAGAATTGGTTGCAAGGGATCTGCATGATAATGAATGGAAATTTAGGCATATATTTCGGGGTCAGCCGAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAAAGGCTCGTTGCTGGCGATTCTGTGATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGAATCCGTCGAGCCAATCGTTCACAAACCGTGATGCCTTCATCAGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTTACGATATTTTATAATCCGAGGGCTAGCCCATCCGAATTTATCATACCTCTGGCCAAGTATGTAAAAGCTGCATATCATACTCGTGTTTCAGTTGGGATGCGTTTCAGAATGCTGTTTGAAACTGAAGAATCAAGCGTTCGCCGTTACATGGGTACTATAACTGGCATCAGTGATTTAGATCCTGCTCGGTGGTCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCCGGGGAGAGACAGCCAAGGGTCTCGTTATGGGAGATTGAGCCATTAACAACATTCCCAATGTATCCGTCTCCATTTCCCCTCAGGCTTAAGCGACCATGGCCAACTGGATTGCCGTCTTTCCATGGTATGAAAGATGATGACCTGATGGGAATGAATCCTCAGCTAATGTGGCTACGGGGAGATGGTGTAGATCGTGGAATTCAACCTCTGAACTTCCCTGGTATTGGCGTTGCACCGTGGATGCAGCCTAGGCTTGATGCTTCTATGGTTGGCTTGCAGCCCGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAAATGAGAACTGTAGATCCTTCTAAAGCACAGGCTGCTCAACTTCTTCAATTCCAACAACCCCAAAGTATTCCCAACAGGCCTGCTACTTTTATGCCATCTCAAATGTTACAGCAGTCTCAACCTCAACAGACCTTTCTTCAAGCTGTGCATGAAAACCAACAGCTTTCTCAGTCTCAGGCCCAAACTCAGACAAATGTTCTTCAGCAGGAAATGAAGCATCAAACATTCAACAACCAACACCAACACCAACATCTACATCAACAGCAGCTTCAGCCACAGTCACAGTCACAATCACAATCACAGTCACAGTCACAGTCACAGTCACAGCCTCAGCCTCAGCCTCAGCCGCCGCCGCCGCCGCAACCACAACATCAAGTCTTTGATCATCAACAAATTCAGAGTACCATCTCTACAATGTCTCAGTTTGGTTCAGCATCACAACCTCAGACACAATCCTTGCAAAGCATCCCTTCATTATGCCGACAGCAGAGTTTTTCTGATTCAAATGCCAATCACGTGACTAGTCCCATCATTTCACCATTGCACAGCCTCTTAGGTTCATTTCCGCAGGATGAATCATCTCAGCTGCTAAATCTGCCTAGAACTAATTCCATGATACATTCCTCTACATGGCCTTCAAAGCGAGCTGCGATTGATCCTCTTATCGCTTCCGGAAATTCTCAATATGTTCTGCCTCAGGGGGAAAACATGGGGACGCCTCAGACTAATATGTCTCAGAATACCATTTCATTACCTCCTTTTCCTGGTAGGGAGTGCTCATTAGATCAAGGGCATGCCGATCCACAGAGTAATCTTCTATTTGGTGTCAATATAGAGCCTTCATCCCTTCTAATGCAGAATGGCATGTCAAGTCTTCGGGGAATTTGCAGTGATAGTGACCCAACAGCTATTCCTTTTTCTTCCAATTATATGAATGCTGCTGGTAACAACTTCTCTGCCAATCCAACTGGGACAGCTTCCAATTGCATCGAGGATTCGGGTTTCTTGCAGTCTCCAGAAAATGCAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCAGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGCAGCTATCATCAGCTACGCAGTGAGCTTGCTCACATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTTCTTGGGGATGATCCCTGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTCTCACCACAAGAAGTGCAGGAGATGGGCAAACGGGGCCTAGAGCTTTTGAACTCGGTCCCAATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTTTGCCAACCGCCAGGATTCCTCCAGAAACTTAAGTACCGGGATAACCTCCGTCGGGTCTCTCGAGTACTAA 2808 46.58 MRLSTPGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRAVYFAQGHSEQVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLNPQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELVARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRSQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGMKDDDLMGMNPQLMWLRGDGVDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPSKAQAAQLLQFQQPQSIPNRPATFMPSQMLQQSQPQQTFLQAVHENQQLSQSQAQTQTNVLQQEMKHQTFNNQHQHQHLHQQQLQPQSQSQSQSQSQSQSQSQPQPQPQPPPPPQPQHQVFDHQQIQSTISTMSQFGSASQPQTQSLQSIPSLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNSMIHSSTWPSKRAAIDPLIASGNSQYVLPQGENMGTPQTNMSQNTISLPPFPGRECSLDQGHADPQSNLLFGVNIEPSSLLMQNGMSSLRGICSDSDPTAIPFSSNYMNAAGNNFSANPTGTASNCIEDSGFLQSPENAGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNFANRQDSSRNLSTGITSVGSLEY 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37927991 37933520 - evm.model.ptg000014l.108 HCH14g1100 559003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1100 935 Gene3D - 291 363 - -
HCH14g1100 935 MobiDBLite consensus disorder prediction 474 493 - -
HCH14g1100 935 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH14g1100 935 Gene3D - 125 228 IPR015300 -
HCH14g1100 935 FunFam Auxin response factor 291 363 - -
HCH14g1100 935 FunFam Auxin response factor 125 229 - -
HCH14g1100 935 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
HCH14g1100 935 MobiDBLite consensus disorder prediction 526 560 - -
HCH14g1100 935 SUPERFAMILY CAD & PB1 domains 794 876 - -
HCH14g1100 935 Pfam AUX/IAA family 797 890 IPR033389 -
HCH14g1100 935 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
HCH14g1100 935 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
HCH14g1100 935 MobiDBLite consensus disorder prediction 526 578 - -
HCH14g1100 935 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
HCH14g1100 935 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
HCH14g1100 935 MobiDBLite consensus disorder prediction 561 575 - -
HCH14g1100 935 FunFam Auxin response factor 796 890 - -
HCH14g1100 935 Gene3D - 798 890 - -
HCH14g1100 935 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 892 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH14g1100 935 ProSiteProfiles PB1 domain profile. 801 885 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0582 HCH-Chr10:4660903 HCH14g1100 HCH-Chr14:37927991 1.40E-162 dispersed
HCH12g0140 HCH-Chr12:763691 HCH14g1100 HCH-Chr14:37927991 1.70E-169 dispersed
HCH14g1100 HCH-Chr14:37927991 HCH8g1520 HCH-Chr8:49320730 1.60E-106 dispersed
HCH10g0173 HCH-Chr10:1430914 HCH14g1100 HCH-Chr14:37927991 3.20E-16 transposed
HCH10g1097 HCH-Chr10:39547104 HCH14g1100 HCH-Chr14:37927991 8.30E-264 transposed
HCH12g1544 HCH-Chr12:41949012 HCH14g1100 HCH-Chr14:37927991 7.60E-102 transposed
HCH1g0159 HCH-Chr1:12427444 HCH14g1100 HCH-Chr14:37927991 1.60E-12 transposed
HCH5g0663 HCH-Chr5:4792412 HCH14g1100 HCH-Chr14:37927991 5.60E-101 transposed
HCH6g1284 HCH-Chr6:47092980 HCH14g1100 HCH-Chr14:37927991 5.30E-99 transposed
HCH14g1100 HCH-Chr14:37927991 HCH3g0834 HCH-Chr3:6324251 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33009 PF02362 B3 1.20E-21 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1100 K14486 - csv:101210406 1559.66