Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1105 ATGAATCAGACGGATAATCAACAATATCACATGAACGCGCCATGCGCGGCATGCAAATATCTAAGAAGAAAATGCTTACCGGAATGCGTTTTCGCGCCGTATTTTCCTCCGGATAAGCCCGATAATTTCGCTTTCGTCCATAGAGTTTACGGCGCAAGTAACGTATCGAAAATGCTCGGCGATGTAAATCCCGATCAACGAGAAGACGTTGTTAAATCTCTCGTTTACGAAGCCGGATGTCGCCTTCGAGATCCTGTGTACGGATGCGCAGGTTTTATTTCAAATCTTCAGTGGAGGCTTAAACAGACTCATCTCGAGCTTTTAATGACTAAGAGAGAGATTTCTAATTATTTAGAACGTCAAGCTATGGCTCCGATTCTTCAGCCTGAGTCACATTTGATCAACGCTGAAATTCCAATGCAGAATTCTCAGCCGTTGAATGTCGATCACGTTCATCAATCGTATCTGTCGCCGGAGATGTTCTTGGCTAATAACGAGGGAATGAAAATTTATGATAATAATAGTAACCTAACAGATTTTGGTAATACTCACGAATATGATCCGAGGATGACGACGATGTCTAATTCCAATTCTTTCGAAGGAATAAATTATCAAATTGAATCACAGAAACCTGATGATTATAATTCTAATATTTTTCAACAGCAATTCTTGATGCAGCAGCCGCATTTTGCAACGCCAGAACTGAAACCGTCAACGTCATCATTGCGGCTTGGCCAAGATGCTGCCGAAACGGGAAGCAAAAACGCTGATTGA 774 41.73 MNQTDNQQYHMNAPCAACKYLRRKCLPECVFAPYFPPDKPDNFAFVHRVYGASNVSKMLGDVNPDQREDVVKSLVYEAGCRLRDPVYGCAGFISNLQWRLKQTHLELLMTKREISNYLERQAMAPILQPESHLINAEIPMQNSQPLNVDHVHQSYLSPEMFLANNEGMKIYDNNSNLTDFGNTHEYDPRMTTMSNSNSFEGINYQIESQKPDDYNSNIFQQQFLMQQPHFATPELKPSTSSLRLGQDAAETGSKNAD 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 37979157 37979930 + evm.model.ptg000014l.103 HCH14g1105 559008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1105 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 185 - -
HCH14g1105 257 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
HCH14g1105 257 MobiDBLite consensus disorder prediction 232 257 - -
HCH14g1105 257 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1105 HCH-Chr14:37979157 HCH2g0088 HCH-Chr2:6108360 2.10E-40 dispersed
HCH14g1105 HCH-Chr14:37979157 HCH2g0930 HCH-Chr2:52711609 3.00E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33010 PF03195 LOB 5.50E-39 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1105 - - - 0.0