Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1123 ATGGCTCTTGTTATGCATAAAGATTCAGCAAATAAACAGATGGATTCAAGCAAATATGTAAGGTATACACCAGAACAAGTTGAAGCATTAGAGAGAGTTTATGCAGAATGTCCAAAGCCTAGCTCATTGAGAAGGCAGCAGCTCATTAGAGAGTGTCCTATTCTCTCTAACATTGAGCCTAAACAGATAAAAGTTTGGTTTCAAAATCGCAGATGTCGTGAGAAGCAGAGGAAGGAATCTTCTCGTCTCACGACTGTGAATCGAAAGCTTTCTGCAATGAACAAATTGTTGATGGAAGAGAATGACCGCTTACAGAAACAGGTGTCACATTTGGTTTATGAAAACGGATATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGATAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAACACCTCAGCATCCCCAAAGGGATGCTAATAACCCAGCTGGTCTTCTCGCGGTTGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCTCGAGCCTGTGGTCTTATTAGTCTAGAGCCAACGAAGGTTGCAGAAATTCTAAAAGATCGCCTTTCGTGGTATCGTGACTGTCGCTGTCTTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTATGCCCCAACAACATTGGCAGCAGCGCGTGACTTCTGGATAATGAGATATTCGTCGAGTTTAGAAGATGGCAGTCTAGTGGTATGTGAGAGATCATTGACTTCATCAACTGGTGGCCCAGCAGGGCCTCCATCTTCAAGTTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATTTAATACGAGCATGTGATGGCGGTGGATCCATCATTCACATTGTCGATCACGTTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTCTATGAGTCATCCAAGATTCTTGCTCAAAAAATGACAATAGCTGCGCTACGTCACATAAGACAAATTGCACTAGAGACTAATGGAGAAATTCAATATAATGGTGGACGTCAACCAGCTGTACTGCGGACATTTAGTCAAAAACTTTGCAGGGGCTTCAACGATGCTGTTAATGGATTTGCGGATGACGGCTGGTCACCTATGGGCAGTGATGGTTTGGAGGATGTGACAATCGTCATAAACTCATCAGCAAATAAATTTGCTGGATCCCAGTATAACATGTCTATGTACTCCTCTTTTGGTGGAGTGATGTGTGCGAAGGCATCAATGCTGCTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTTAGAGAGCATCGATCTGAATGGGCCGATTATGGAGTTGATGCCTACTCTGCTGCTTGTCTTAAAGCCAGTCCTTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCAAGTAGCCAGGTCATTTTGCCTCTTGCTCATACTGTGGAGCATGAAGAGTTTTTGGAGGTGGTTAGGCTGGAGGGCCTTGCATTTTCCCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATGCAGTCGGTGCCTGTGCTCAGCTTGTGTTTGCACCTATAGACGAGTCTTTTGCTGATGATGCTCCACTACTACCTTCTGGGTTTCGTGTCATACCGTTGGATCCTAAAACAGATGAACATACCACTGCTCGAACGTTGGATTTAGCCTCTACTCTTGAAATTGGTGCCAATGCTGCACGTTCTGCTGGTGAAACTGATCTGAGCAGTTACAACCTTAGGTCAGTCTTGACTATTGCATTCCAGTTCACTTTTGAGAATCACTTGCAAGAAAATGTGGCTGCCATGGCTCGACAATATGTACGTAGTGTCGTGGGGTCTGTTCAGAGGGTTGCCATGGCCATTGCCCCATCACGATTGAGTTCCAATGTGGGACTAAAGCCCCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTACCGAAGCTACAGGATCCACATTGGAGCCGAGCTCCTTCAATCTGATTCCCAGTCTGGTGATGCTATATTGAAGCAACTCTGGCACCACTCCGATGCAATCATGTGTTGCTCCGTAAAAACCAATGCATCTGCTGTGTTCACCTTTGCAAACCAGGCTGGTCTTGACATGCTTGAAACCACTCTTGTTGGCCTACAAGATATAATGCTTGATAAAATTCTGGACGAAGCTGGTCGGAAGATTCTCTGTTCCGAGTTCCCTAAAATAATGCAGCAGGGATTCACAAACCTGCCATCGGGTATATGCGTTTCGAGTATGGGCCGGCCTGTCTCTTACGATCAAGTGATTGCATGGAAAGTTCTCAACGACGAAGATACCAACCACTGTCTGGCTTTCATGTTCACAAATTGGTCTTTTGTGTGA 2541 45.89 MALVMHKDSANKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLTTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPTPQHPQRDANNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLISLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWIMRYSSSLEDGSLVVCERSLTSSTGGPAGPPSSSFVRAEMLPSGYLIRACDGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIALETNGEIQYNGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANKFAGSQYNMSMYSSFGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEHTTARTLDLASTLEIGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAIAPSRLSSNVGLKPLPGSPEALTLARWIYRSYRIHIGAELLQSDSQSGDAILKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFTNLPSGICVSSMGRPVSYDQVIAWKVLNDEDTNHCLAFMFTNWSFV 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38147369 38153131 - evm.model.ptg000014l.85 HCH14g1123 559026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1123 846 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
HCH14g1123 846 Gene3D - 191 375 IPR023393 -
HCH14g1123 846 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289(InterPro)
HCH14g1123 846 Coils Coil 87 107 - -
HCH14g1123 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
HCH14g1123 846 Gene3D - 9 83 - -
HCH14g1123 846 MobiDBLite consensus disorder prediction 123 159 - -
HCH14g1123 846 CDD START_ArGLABRA2_like 161 377 - -
HCH14g1123 846 Pfam MEKHLA domain 701 845 IPR013978 -
HCH14g1123 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
HCH14g1123 846 SUPERFAMILY Bet v1-like 167 377 - -
HCH14g1123 846 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
HCH14g1123 846 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
HCH14g1123 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 846 IPR044830 GO:0003700(InterPro)
HCH14g1123 846 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
HCH14g1123 846 MobiDBLite consensus disorder prediction 123 157 - -
HCH14g1123 846 CDD bZIP 70 109 - -
HCH14g1123 846 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
HCH14g1123 846 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1123 HCH-Chr14:38147369 HCH2g1180 HCH-Chr2:54309966 0.00E+00 dispersed
HCH4g1429 HCH-Chr4:10491100 HCH14g1123 HCH-Chr14:38147369 0.00E+00 transposed
HCH14g1123 HCH-Chr14:38147369 HCH3g0857 HCH-Chr3:6704258 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33012 PF01852 START 4.90E-50 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1123 K09338 - csv:101210154 1584.31