Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1124 ATGGCACATGAAGGTTGCTGGGTCGGTCACTTGACAGTGGTGAATTTTGCACCACTGCTGGTTGGATATTGTGATCGTTTCATTTGGTGCGCCGCGCATTACAACCCCATGACTTCTTCCGCACACGATTATTCTGATAACAGTGAGGCCGACGAGCAACAAAAGTACAGCGAATCTCAAAATCATTCTTCATCAGCCCTAAATGGAATGAATCAACCTGCCATTTCAACCTCTAATCAATATTCGACACCTTCACAACTTGGAACAGGACATGCTATGGCACCCCCTACTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTACTCCCTATGATACTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCCAAAGCTGAATCAGAGAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAGTCGCGACACTTGCATGCATTAAGGAGAGCTAGAGGTTGCGGTGGTCGGTTTCTCAAATCGAAGGATGATGAGAATCAACAAAGTGAAGTGGCATCAGGTGATAAATCACATCCCAATATAAATCTCAATACCGATAAAAATGGTCTTGCTTCTTCAGAGAGTACATCCTGA 732 44.4 MAHEGCWVGHLTVVNFAPLLVGYCDRFIWCAAHYNPMTSSAHDYSDNSEADEQQKYSESQNHSSSALNGMNQPAISTSNQYSTPSQLGTGHAMAPPTYPYPDPYYRSIFTPYDTQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSKDDENQQSEVASGDKSHPNINLNTDKNGLASSESTS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38158728 38161669 - evm.model.ptg000014l.84 HCH14g1124 559027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1124 243 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 234 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH14g1124 243 SMART cbf3 146 207 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 218 243 - -
HCH14g1124 243 Gene3D - 147 208 - -
HCH14g1124 243 MobiDBLite consensus disorder prediction 41 93 - -
HCH14g1124 243 MobiDBLite consensus disorder prediction 203 243 - -
HCH14g1124 243 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 149 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 166 184 - -
HCH14g1124 243 MobiDBLite consensus disorder prediction 166 189 - -
HCH14g1124 243 ProSitePatterns NF-YA/HAP2 subunit signature. 152 172 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 203 217 - -
HCH14g1124 243 PRINTS CCAAT-binding transcription factor subunit B signature 150 172 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 PRINTS CCAAT-binding transcription factor subunit B signature 181 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 57 90 - -
HCH14g1124 243 ProSiteProfiles NF-YA/HAP2 family profile. 147 207 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0556 HCH-Chr10:4471161 HCH14g1124 HCH-Chr14:38158728 5.90E-27 dispersed
HCH11g0488 HCH-Chr11:5717611 HCH14g1124 HCH-Chr14:38158728 6.50E-23 dispersed
HCH14g1124 HCH-Chr14:38158728 HCH8g0446 HCH-Chr8:39553871 1.60E-26 dispersed
HCH14g1124 HCH-Chr14:38158728 HCH2g1368 HCH-Chr2:55522863 5.00E-28 transposed
HCH14g1124 HCH-Chr14:38158728 HCH4g1200 HCH-Chr4:8039548 5.00E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33013 PF02045 CBFB_NFYA 5.60E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1124 K08064 - csv:101205549 332.798