Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1124 ATGGCACATGAAGGTTGCTGGGTCGGTCACTTGACAGTGGTGAATTTTGCACCACTGCTGGTTGGATATTGTGATCGTTTCATTTGGTGCGCCGCGCATTACAACCCCATGACTTCTTCCGCACACGATTATTCTGATAACAGTGAGGCCGACGAGCAACAAAAGTACAGCGAATCTCAAAATCATTCTTCATCAGCCCTAAATGGAATGAATCAACCTGCCATTTCAACCTCTAATCAATATTCGACACCTTCACAACTTGGAACAGGACATGCTATGGCACCCCCTACTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTACTCCCTATGATACTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCCAAAGCTGAATCAGAGAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAGTCGCGACACTTGCATGCATTAAGGAGAGCTAGAGGTTGCGGTGGTCGGTTTCTCAAATCGAAGGATGATGAGAATCAACAAAGTGAAGTGGCATCAGGTGATAAATCACATCCCAATATAAATCTCAATACCGATAAAAATGGTCTTGCTTCTTCAGAGAGTACATCCTGA 732 44.4 MAHEGCWVGHLTVVNFAPLLVGYCDRFIWCAAHYNPMTSSAHDYSDNSEADEQQKYSESQNHSSSALNGMNQPAISTSNQYSTPSQLGTGHAMAPPTYPYPDPYYRSIFTPYDTQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSKDDENQQSEVASGDKSHPNINLNTDKNGLASSESTS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38158728 38161669 - evm.model.ptg000014l.84 HCH14g1124 559027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1124 243 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 234 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH14g1124 243 SMART cbf3 146 207 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 218 243 - -
HCH14g1124 243 Gene3D - 147 208 - -
HCH14g1124 243 MobiDBLite consensus disorder prediction 41 93 - -
HCH14g1124 243 MobiDBLite consensus disorder prediction 203 243 - -
HCH14g1124 243 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 149 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 166 184 - -
HCH14g1124 243 MobiDBLite consensus disorder prediction 166 189 - -
HCH14g1124 243 ProSitePatterns NF-YA/HAP2 subunit signature. 152 172 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 203 217 - -
HCH14g1124 243 PRINTS CCAAT-binding transcription factor subunit B signature 150 172 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 PRINTS CCAAT-binding transcription factor subunit B signature 181 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH14g1124 243 MobiDBLite consensus disorder prediction 57 90 - -
HCH14g1124 243 ProSiteProfiles NF-YA/HAP2 family profile. 147 207 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1124 K08064 - - csv:101205549 332.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0556 HCH-Chr10:4471161 HCH14g1124 HCH-Chr14:38158728 5.90E-27 dispersed
HCH11g0488 HCH-Chr11:5717611 HCH14g1124 HCH-Chr14:38158728 6.50E-23 dispersed
HCH14g1124 HCH-Chr14:38158728 HCH8g0446 HCH-Chr8:39553871 1.60E-26 dispersed
HCH14g1124 HCH-Chr14:38158728 HCH2g1368 HCH-Chr2:55522863 5.00E-28 transposed
HCH14g1124 HCH-Chr14:38158728 HCH4g1200 HCH-Chr4:8039548 5.00E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g1368 . 1 232 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.5 1.2e-57 220.3
HCH8g0446 . 1 236 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.5 1.9e-52 203.0
HCH8g0446 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 6.0e-47 184.9
HCH14g1124 . 37 243 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.1 2.8e-50 195.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33013 PF02045 CBFB_NFYA 5.60E-26 No_clan HCH TF