Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1126 ATGCATAATCGATCATTGGAACTTGGGAGGCCTGCTTCAGGCAAACGGAGATTAAAAGATTTATTGCTTCTAAAGGATAATCGTTTCTGTGCGGATTGTAACGCTTCAGATCCAAAATGGGCGTCAGCAAATATTGGAGTTTTCATATGCTTGAAATGTTGTGGTGTACACAGAAGCCTTGGTTCACATATATCAAAGGTATTATCAGTGACGTTGGATGAATGGAGTGATGATGAAATTGATGCCATGGTAGAGGTTGGAGGAAACTCTTCAGCAAATGCAATTTATGAAGCCTTTATTCCTGAAGGTTTTTCAAAGCCTGGACCAGATGCCACCCACGAACTACGTGCAAAATATATTCGGTCCAAATATGAGCTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCAACCAACTCTGGCAAAAGTTCTATCCAAGCCACCTTTTCTACAAGGATAATGAATAGTTTTCGTACAAATCCTTCACAGAAATCAGCAGAAGGTATGGTTGAGTTTATTGGATTATTGAAGGTCAAAGTGATTAAAGGCACAAATTTAGCTATTAGGGACATGATGTCAAGTGATCCTTACGTTGTCTTGGCCCTCGGAAAACAGACTGTTCAGACAACTATAATAAAGAGCAATTTAAATCCTGTATGGAACGAGGAACTCATGCTATCCGTACCTCATTGTTTTGGTTCCTTAAAGTTGAAAGTATACGATTACGACACATTTTCAGCAGATGACATAATGGGAGAAGCAGAAATCGATCTCCAGCCGCTGATAACATCAGCAATGGCATTCGGAGATGCTGGAATGTTCGGAAACATGCAGATTGGAAAATGGCTGAAATCACACGATAACGCTCTCATTGACGACAGCACTGTTAATATTGTTGATGGTAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGAATTAGAGCTAGAATGGATGCCTCTTGAGCAATAG 996 39.86 MHNRSLELGRPASGKRRLKDLLLLKDNRFCADCNASDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDDEIDAMVEVGGNSSANAIYEAFIPEGFSKPGPDATHELRAKYIRSKYELQEFLKPSLRILSTNSGKSSIQATFSTRIMNSFRTNPSQKSAEGMVEFIGLLKVKVIKGTNLAIRDMMSSDPYVVLALGKQTVQTTIIKSNLNPVWNEELMLSVPHCFGSLKLKVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFGNMQIGKWLKSHDNALIDDSTVNIVDGKVKQEISLKLQNVESGELELELEWMPLEQ 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38170846 38174076 + evm.model.ptg000014l.82 HCH14g1126 559029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1126 331 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 331 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
HCH14g1126 331 CDD ArfGap 27 124 - -
HCH14g1126 331 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
HCH14g1126 331 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
HCH14g1126 331 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
HCH14g1126 331 SMART C2_3c 176 271 IPR000008 -
HCH14g1126 331 CDD C2_ArfGAP 174 315 - -
HCH14g1126 331 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
HCH14g1126 331 Gene3D C2 domain 173 331 IPR035892 -
HCH14g1126 331 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
HCH14g1126 331 ProSiteProfiles C2 domain profile. 159 272 IPR000008 -
HCH14g1126 331 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
HCH14g1126 331 Pfam C2 domain 175 263 IPR000008 -
HCH14g1126 331 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 323 IPR035892 -
HCH14g1126 331 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
HCH14g1126 331 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096(InterPro)
HCH14g1126 331 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
HCH14g1126 331 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 173 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1188 HCH-Chr10:42353502 HCH14g1126 HCH-Chr14:38170846 1.10E-94 dispersed
HCH14g1126 HCH-Chr14:38170846 HCH1g0635 HCH-Chr1:55338808 1.20E-96 dispersed
HCH12g1112 HCH-Chr12:8637692 HCH14g1126 HCH-Chr14:38170846 3.80E-24 transposed
HCH14g1126 HCH-Chr14:38170846 HCH3g0858 HCH-Chr3:6733170 2.90E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1126 K12486 - csv:101218116 574.318