Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1163 ATGGGAAGAGGAAAGATAGCAATAAAAAGGATTGAGAACCGAACGACAAGACAAGTGACATTTTCTAAGAGAAGAGCGGGTTTGTTTAAGAAAACACATGAACTTTCTGTTCTTTGCGATGCTCAGATCGGACTCATCGTCTTCTCCACCAATGGCAAGTTGTTTCAGTATTGCTCTCAACCATCCACCATGGATGAAATAATCAAAAGGTATCAGGATAACACAGGGACTCGTATTCCAGAGCACAACATGAACAATCCAGATCAATTGCATAGCGAAATGAGGAGAATTAAAAAAGGTACGGACGAGCTTCAGCTAAGACTTCAACGGTATAATTGTGAGAATTTGAATTCCATTGAGCTTCGAGATCTTGATAATTTTGAGCACGAACTCCAACTCTCCATCAATAAGGTCCGAGCTCGTAAGTCGGAGCTCTTGCAACAACAGCTGGACAATTTGCGCAGAAAGGAAAAAATGCTGGAGGAAGAAAATGAACAAATTTATCATCTGATAAAAGAGCAACAGATAGCCATGGAGCAGCAAGAGGCGGTTGCAGCTATGAAAATGATGCAGAAAACGGAGCTGGAGGAAGAGCAGAGCTGCAGGCTTATGGATCATCATAATCAACATCAGTTCTCATTCATGCATGGACTTGGAGGTCAAGAAGATCATCAAGATGAGCCCAGCAGCGTCCTTCAGCTGGCTCCGTTGCCGCTGCCGCCACCACCGCCGCCTTTCCATCCATATCGCCTCCAGCCCATTCAACCCAACCTTCAAGATATCAATCTCCATCACTCCTCCTATGGTACTCCACTCCTTGACCTAAGCCTATATATATGCATGGTTCCTCAGTATATATAA 861 43.9 MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSTNGKLFQYCSQPSTMDEIIKRYQDNTGTRIPEHNMNNPDQLHSEMRRIKKGTDELQLRLQRYNCENLNSIELRDLDNFEHELQLSINKVRARKSELLQQQLDNLRRKEKMLEEENEQIYHLIKEQQIAMEQQEAVAAMKMMQKTELEEEQSCRLMDHHNQHQFSFMHGLGGQEDHQDEPSSVLQLAPLPLPPPPPPFHPYRLQPIQPNLQDINLHHSSYGTPLLDLSLYICMVPQYI 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38453405 38455910 + evm.model.ptg000014l.45 HCH14g1163 559066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1163 286 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH14g1163 286 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 ProSiteProfiles K-box domain profile. 87 182 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH14g1163 286 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 Coils Coil 178 198 - -
HCH14g1163 286 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH14g1163 286 Coils Coil 143 173 - -
HCH14g1163 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH14g1163 286 Pfam K-box region 86 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH14g1163 286 Gene3D - 13 98 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1163 HCH-Chr14:38453405 HCH9g0327 HCH-Chr9:2041713 3.50E-33 dispersed
HCH14g1163 HCH-Chr14:38453405 HCH4g0160 HCH-Chr4:909457 4.00E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33017 PF01486 K-box 1.50E-15 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1163 - - - 0.0