Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1171 ATGGCGCCGAGTTTCAGAGACCTACAGCTTACCAATTTATCAACCTCTGACCGTAGACCGCCTCCTCCTTCTTCTGAGCTTTCTGATGATCTCGAGGATGTGCGTCTTCTCGATTCCTACGAAACCACAGATGATAATTTAGCAATAATTGAACAAGGTTTCAGGAGGATTCAGCTCTCAGTTACGGGGATGACCTGTGCTGCTTGCTCTAATTCCGTCGAAGCTGCCTTGAAATCCCTCAATGGTGTTTTTACAGCTTCCGTTGCTTTGCTTCAGAATAGAGCTCATGTCGTTTTTGATCCCAACTTGGTTAAGGATGAAGACATCAAGGATGCTATAGAAGATGCTGGATTTGAGGCAGAGATTATACCTGATACCAGTTCACTTGGAAAGAAGCCTCATGGAACACTGTTGGGTCAATTTACCATAGGAGGCATGACGTGTGCAGCCTGTGTGAACTCAGTTGAAGGAATTTTGAAAAATATCCCTGGTGTCAAAAGAGCAGTCGTTGCTTTGGCCACTTCGTTGGGAGAAGTTGAATATGATCCAACTATAACTAGTAAAGATGATATAGTTAATGCAATTGAAGATGCTGGCTTCGAAGCTTCATTTGTTCAGAGCAGTGAGCAAGATAAAATTTTGCTAGGGGTTGCAGGCATTACTAGTGAGGTAGATGTACAGTTTTTGGAAGTCATACTTGGCAATTTGAAAGGGGTGAGACAGTTTCTCTTTAACAGGACATCGGGAATACTTGAAGTCATTTTTGACCCAGAAGTTGTTGGTCCCAGATTCATAGTGGATGAGATTGAGGGAGGAAGCAATAGAAAATTTAAATTGCACGTAATGAGCCCATACATGAGATTATCTTCTAAAGATGTTGAAGAAGCTACTAACATGTTTCGGCTTTTCACCTCCAGTCTGTTTCTCAGTATACTTATCTTTCTCATACGAGTGGTATGCCCTCATATTCCTCTAATCTACTCCTTATTACTCTGGCGGTGTGGGCCCTTCCTAATGGATGATTGGTTGAAGTGGGCATTGGTGACTATTGTGCAATTTGTCATTGGAAAACGATTTTATGTTGCAGCTGCTAGGGCTCTTCGAAATGGTTCTACTAACATGGATGTTTTGGTTGCTTTGGGTACCTCGGCCTCTTACTTCTATTCTGTGTGTGCACTTCTCTATGGTGCAGTCACAGGATTTTGGTCTCCTACATATTTTGAAACTAGTGCAATGCTGATAACCTTTGTTTTATTGGGAAAGTATTTAGAATGTCTTGCTAAGGGGAAAACATCAGACGCCATTAAGAAGCTCGTGGAACTTGCTCCAGCAACTGCACTATTGCTTGTATTCGATAAAGGTGGTAATTTGGTAGAAGAAAGGGAAATAGATGCTTTGCTGATTCAACCTGGTGATGCATTAAAAGTTATTCCCGGTGCAAAGATTCCAGCTGATGGTGTTGTTATTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTCACTGGAGAATCTATACCTGTTCTAAAGGAGGTTAACTCACATGTTATTGGGGGTACAATTAATTTACATGGTGCACTACACATTCAAGCAACAAAAGTAGGATCTGATGCAGTTTTGAACCAAATCATTAGTTTGGTTGAGACAGCACAGATGTCTAAAGCTCCTATTCAGAAATTTGCTGATTTTGTAGCAAGCATATTTGTTCCTACCGTTGTTGCTATGGCATTGTGTACATTATTTGGTTGGTACATTGGTGGAACTCTTGGGGCTTACCCAAAACAATGGCTCCCAGAAAATGGAAACTACTTTGTATTTTCCCTTATGTTTGCAATATCAGTTGTGGTGATTGCATGTCCTTGTGCACTCGGCTTGGCCACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGTGCTAGCAATGGAGTCTTGATCAAAGGAGGAGATGCTTTGGAGAGGGCTCAAAAGGTTAAGTACGTGATATTCGATAAAACAGGCACGCTTACCCAAGGGAAAGCTACAGTTACCACTGCAAAAGTCTTTGCTGGAATTTCTAGAGCAGATTTTCTTAAGTTGGTTGCTTCTGCAGAGGCTAGTAGTGAACACCCACTGGGAAAAGCTGTAGTGGAGTACGCACGTCATTTCCATTTCTTTGATGAGCCTTCCACCACCGAAAATGTGGAAAACCAGAGTAGAGCTTCTGGATGGCTTTTTGATGCCTTAGGTTTCACTTCATTGCCAGGAAAAGGGATCCAGTGCTTTATAGAAGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAATGGAATCTCCATAGAACCTCATGTAGATAATTTTGTTGTAGAACTTGAAGAAAGTGCCAAGACTGGTATTCTTGTCGCATCTGATGATAACTTAATTGGAGTTTTGGGAATAGCAGATCCACTAAAGAGAGAAGCTGCCGTTGTTGTAGAGGGCCTTGTAAAAATGGGAATTTCTCCAGTCATGGTTACAGGGGATAACTGGAGAACAGCTCGTGCTGTTGCTAAAGAGCTTGGTATACAGGATGTGAGGGCAGAAGTAATGCCAGCGGGAAAAGCTGAAGTCATCCAATTGTTGCAAAAGGATGGTAGCATAGTTGCGATGGTAGGTGATGGCATCAATGACTCACCTGCTCTAGCTGCTGCTGATATTGGCATAGCAATTGGGGCAGGAACTGATGTTGCCATAGAAGCTGCCAACTTTGTATTGATGAGAAATAACTTGGAAGATGTGATTACAGCCATCGATCTCTCAAGAAAAACGTTCAATCGGATAAGATTGAATTATGTGTTTGCAATGGCCTACAATGTGATAGCAATCCCTGTTGCTGCTGGAGTATTTTTCCCTTCTTTGGGAATCAAATTGCCACCATGGGCTGCCGGTGCATGCATGGCTCTATCATCTGTAAGTGTTGTTTGCTCTTCTTTGCTTCTTAGGAGATACAAAAGACCCAGACTTACCACCATACTGGAAATTACTGTAGAATAG 3015 42.19 MAPSFRDLQLTNLSTSDRRPPPPSSELSDDLEDVRLLDSYETTDDNLAIIEQGFRRIQLSVTGMTCAACSNSVEAALKSLNGVFTASVALLQNRAHVVFDPNLVKDEDIKDAIEDAGFEAEIIPDTSSLGKKPHGTLLGQFTIGGMTCAACVNSVEGILKNIPGVKRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKILLGVAGITSEVDVQFLEVILGNLKGVRQFLFNRTSGILEVIFDPEVVGPRFIVDEIEGGSNRKFKLHVMSPYMRLSSKDVEEATNMFRLFTSSLFLSILIFLIRVVCPHIPLIYSLLLWRCGPFLMDDWLKWALVTIVQFVIGKRFYVAAARALRNGSTNMDVLVALGTSASYFYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLVFDKGGNLVEEREIDALLIQPGDALKVIPGAKIPADGVVIWGSSYVNESMVTGESIPVLKEVNSHVIGGTINLHGALHIQATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYIGGTLGAYPKQWLPENGNYFVFSLMFAISVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFAGISRADFLKLVASAEASSEHPLGKAVVEYARHFHFFDEPSTTENVENQSRASGWLFDALGFTSLPGKGIQCFIEGKRILVGNRKLMNENGISIEPHVDNFVVELEESAKTGILVASDDNLIGVLGIADPLKREAAVVVEGLVKMGISPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQLLQKDGSIVAMVGDGINDSPALAAADIGIAIGAGTDVAIEAANFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPVAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38516124 38521991 + evm.model.ptg000014l.37 HCH14g1171 559074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1171 1004 Gene3D - 139 204 - -
HCH14g1171 1004 SUPERFAMILY HMA, heavy metal-associated domain 208 271 IPR036163 GO:0046872(InterPro)
HCH14g1171 1004 Gene3D - 758 809 IPR023299 GO:0000166(InterPro)
HCH14g1171 1004 Gene3D - 667 757 IPR023299 GO:0000166(InterPro)
HCH14g1171 1004 NCBIfam heavy metal translocating P-type ATPase 374 987 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
HCH14g1171 1004 SUPERFAMILY Calcium ATPase, transduction domain A 460 546 IPR008250 -
HCH14g1171 1004 SUPERFAMILY HMA, heavy metal-associated domain 139 208 IPR036163 GO:0046872(InterPro)
HCH14g1171 1004 Gene3D - 428 550 - -
HCH14g1171 1004 NCBIfam copper ion binding protein 57 120 IPR006122 GO:0005507(InterPro)
HCH14g1171 1004 NCBIfam copper ion binding protein 140 202 IPR006122 GO:0005507(InterPro)
HCH14g1171 1004 FunFam Copper-exporting P-type ATPase A 137 205 - -
HCH14g1171 1004 CDD HMA 58 121 IPR006121 GO:0046872(InterPro)
HCH14g1171 1004 Pfam E1-E2 ATPase 443 638 - -
HCH14g1171 1004 ProSiteProfiles Heavy-metal-associated domain profile. 55 121 IPR006121 GO:0046872(InterPro)
HCH14g1171 1004 ProSiteProfiles Heavy-metal-associated domain profile. 137 203 IPR006121 GO:0046872(InterPro)
HCH14g1171 1004 FunFam Copper-transporting ATPase 1, putative 428 550 - -
HCH14g1171 1004 MobiDBLite consensus disorder prediction 1 22 - -
HCH14g1171 1004 FunFam Copper-exporting P-type ATPase 758 809 - -
HCH14g1171 1004 FunFam Probable copper-transporting ATPase HMA5 782 935 - -
HCH14g1171 1004 SUPERFAMILY HMA, heavy metal-associated domain 51 125 IPR036163 GO:0046872(InterPro)
HCH14g1171 1004 CDD P-type_ATPase_Cu-like 301 974 - -
HCH14g1171 1004 PRINTS P-type cation-transporting ATPase superfamily signature 825 835 - -
HCH14g1171 1004 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
HCH14g1171 1004 PRINTS P-type cation-transporting ATPase superfamily signature 660 674 - -
HCH14g1171 1004 PRINTS P-type cation-transporting ATPase superfamily signature 878 897 - -
HCH14g1171 1004 PRINTS P-type cation-transporting ATPase superfamily signature 803 814 - -
HCH14g1171 1004 PRINTS P-type cation-transporting ATPase superfamily signature 901 913 - -
HCH14g1171 1004 NCBIfam HAD-IC family P-type ATPase 739 960 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH14g1171 1004 NCBIfam HAD-IC family P-type ATPase 413 681 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH14g1171 1004 ProSitePatterns Heavy-metal-associated domain. 143 172 IPR017969 GO:0046872(InterPro)
HCH14g1171 1004 Pfam haloacid dehalogenase-like hydrolase 656 892 - -
HCH14g1171 1004 Gene3D - 627 935 IPR023214 -
HCH14g1171 1004 ProSitePatterns Heavy-metal-associated domain. 61 91 IPR017969 GO:0046872(InterPro)
HCH14g1171 1004 SUPERFAMILY Calcium ATPase, transmembrane domain M 396 965 IPR023298 -
HCH14g1171 1004 ProSitePatterns E1-E2 ATPases phosphorylation site. 662 668 IPR018303 -
HCH14g1171 1004 PRINTS H+-transporting ATPase (proton pump) signature 909 934 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH14g1171 1004 PRINTS H+-transporting ATPase (proton pump) signature 878 894 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH14g1171 1004 PRINTS H+-transporting ATPase (proton pump) signature 850 866 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH14g1171 1004 FunFam Copper-transporting ATPase RAN1 667 757 - -
HCH14g1171 1004 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 46 1001 - -
HCH14g1171 1004 FunFam Copper-exporting P-type ATPase A 54 123 - -
HCH14g1171 1004 SFLD p-type atpase 642 930 IPR044492 -
HCH14g1171 1004 CDD HMA 140 203 IPR006121 GO:0046872(InterPro)
HCH14g1171 1004 Gene3D - 54 126 - -
HCH14g1171 1004 Pfam Heavy-metal-associated domain 59 119 IPR006121 GO:0046872(InterPro)
HCH14g1171 1004 Pfam Heavy-metal-associated domain 141 201 IPR006121 GO:0046872(InterPro)
HCH14g1171 1004 SUPERFAMILY HAD-like 659 984 IPR036412 -
HCH14g1171 1004 MobiDBLite consensus disorder prediction 1 29 - -
HCH14g1171 1004 SFLD C1.7: P-type atpase like 642 930 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0230 HCH-Chr10:1926466 HCH14g1171 HCH-Chr14:38516124 8.60E-70 dispersed
HCH12g0464 HCH-Chr12:2728258 HCH14g1171 HCH-Chr14:38516124 1.30E-102 dispersed
HCH14g1171 HCH-Chr14:38516124 HCH9g0913 HCH-Chr9:6734602 1.90E-246 dispersed
HCH14g1171 HCH-Chr14:38516124 HCH8g1049 HCH-Chr8:46443646 4.40E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1171 K17686 - csv:101205642 1704.88