Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1177 ATGGGGAAGAAGAAGAAGAGGGTTTCATCAAAGGTATGGTGTTACTACTGCGATAGAGAATTTGACGATGAGAAGATATTGGTTCAACATCAGAAAGCTAAACACTTCAAATGTCATGTTTGTCATAAAAAGCTTTCAACTGCTGGTGGTATGGTCATCCATGTCCTTCAGGTTCACAAAGAGTCTGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAATCAACTGATATTGAAATTTATGGAATGCAAGGAATTCCACCTGATGTTTTGGCAGCTCACTATGGAGACGACGAGGAAGAGAACTCATCTAAGGTGCCGAAAGTGGATATTCCATCAACTCAGCTGGTTGGAGGTATGGTGCCTGGATCACTGGGTATGGTATACCCTCCTCAACCGGGTTTAGCTGCAATGCGACCCATCTACAGTTCAACTGTACAACCACAGTCTGGTGCCTGGCCAGTTCCACTTCGTCCCCAACATTGGTTTCCTCAGAGTTCAGGTGTTTCAATTCCTCCTCCTGCCCCATTGGGCTATGCCCAGCAACCACTATTTCCTGTGCAGAACATAAGGCCCGCACTCCCTGTATCATCAACGCCTGTGCTCCAGCCTCCCCAGATAACTCCTCCCGGATTGCCCTCATCAACACCTTCTACTTCTGTATCTCAACCATTGTTCCCTGTTGTTAGTAATAGCCATGGACCTGCCCAAAGCTCCCCCTTTTCTCCGTTAGCGCTTTCAACTAGCACCCCTTTGAGTTCAGCAGCAGAAATCAAAGGCTCAGTGAGTGCACATCCAGGCACAAACTCTTATACTATTGGCAATCAAGTTCCAAGTATTCCAGGTGGAATGTTAAGCAATTCACACTCTTATGCCTCGGGTCCAAACACAGGTGGTCCCTCTATTGGACCACCTCCTGTAATTGCAAATAAAGCTCCAACTCAGCCATTGACTAATGAAGTATATTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAAAGAATCTTGGAAAGCAGGCTTGCCGGTAGAATGCCATTTTAG 1122 45.63 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDDEEENSSKVPKVDIPSTQLVGGMVPGSLGMVYPPQPGLAAMRPIYSSTVQPQSGAWPVPLRPQHWFPQSSGVSIPPPAPLGYAQQPLFPVQNIRPALPVSSTPVLQPPQITPPGLPSSTPSTSVSQPLFPVVSNSHGPAQSSPFSPLALSTSTPLSSAAEIKGSVSAHPGTNSYTIGNQVPSIPGGMLSNSHSYASGPNTGGPSIGPPPVIANKAPTQPLTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38541276 38544253 + evm.model.ptg000014l.31 HCH14g1177 559080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1177 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH14g1177 373 SMART c2h2final6 12 35 IPR013087 -
HCH14g1177 373 SMART c2h2final6 36 59 IPR013087 -
HCH14g1177 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
HCH14g1177 373 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
HCH14g1177 373 MobiDBLite consensus disorder prediction 196 234 - -
HCH14g1177 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
HCH14g1177 373 CDD SUF4-like 13 92 - -
HCH14g1177 373 MobiDBLite consensus disorder prediction 198 212 - -
HCH14g1177 373 Gene3D Classic Zinc Finger 1 66 - -
HCH14g1177 373 MobiDBLite consensus disorder prediction 213 234 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33020 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1177 K27810 - csv:101206973 632.869