Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1202 ATGGCTACTTCTTTCGTAGATCAGAAGGCTGTTCTCGTCGAAAACATTTTCTTCGACTTTCTCAAGAGTTTTCGGCTCAACTCTGGACTTGGAGATGGAAAACCTTACTACGAGGCGGAGTTAGAAGCTATGATTTCTGCCGAATCTAATACCATCTACATTGATTTCTCTCACCTTATCCTCTCTAATCATCTTCTTCACATTGCCATCTCTCATGAATTTTTCAGGTTTGAACCTTATCTCAAAAACGCCTGTAAGCGCTTTGTCATGGAGCACAATCCTACTTTCATCGCTGATGATAACCCCTTCAAGGACATTAATCTCGCTTTCTTCAACCTTCCTCTTTCTAAAAGGTTGAGAGAACTCACTACTTCTGAAATTGGCAAATTAGTTTCTGTCACTGGAGTCGTCACCCGCACCAGCGAAGTCCGTCCTGAACTTCTTCATGGCACTTTTAAGTGCTTAGAATGTGGAAATGTCATCAACAATGTTGAGCAACAATTTAAGTACACTGAGCCAACCATATGCATGAATCCAACCTGTTCAAATAGAACCAAGTGGGCATTACTTCGCCAAGACAGCAAATTCGCTGATTGGCAGAGGGTCCGAATGCAGGAGACTTCTAAGGAGATACCACCTGGCTCTCTTCCCCGATCATTGGATGTTATTCTCCGCCACGAGATGGTTGAGCATGCCAGGGCTGGAGACACGGTCACATTCACAGGTACAGTGGTCGTGATACCAGATATATTGGCGTTAGCCTCTCCAGGAGAAAGAGCAGAATGCCGCAGAGAAGCTTCTGACCGCAAAAACTCTGCTGTTGGACATGAAGGAATGAGGGGCCTTCGAGCTCTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAACTCTGTTCAGGTTTCAGATGGCAGAGGGGATATTGACATCAGAAATAGGAAGAAGGATGCTGATGAAGACAAACAACAGTTCACCGCAGAAGAGGTTGATGAAGTTCAAAGAATGAGGGACACGCCTGACTTCTTCAACAAACTTGTCCATAGCATTGCACCAGCAGTCTTTGGTCATCCAGATATCAAACGAGCAATCTTTCTAATGCTCTTAGGTGGTGTCCACAAGTTTACACATGAAGGCATCAACCTTCGAGGTGATATAAATGTTTGTATAGTAGGAGATCCCAGCTGTGCAAAATCCCAGTTCCTCAAGTATACTTCAGGCATAGTGCCAAGATCAGTTTATACATCTGGAAAATCCTCTTCTGCTGCTGGATTGACTGCCACTGTAGCCAAGGAACCAGAAACAGGAGAGTTTTGTATTGAGGCTGGTGCCCTAATGCTTGCTGATAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGATATCAAGGACCAGGTTGCAATTCATGAAGCTATGGAGCAACAGACCATAAGCATTACGAAAGCAGGAATACAGGCAACACTAAATGCCAGGACATCAATTCTTGCTGCTGCAAATCCAACCGGAGGGCGCTATGACAAGTCTAAACCCCTCAAGTATAATGTGGCTCTGCCTCCTGCTATTCTTTCAAGGTTTGACCTTGTCTACGTAATGATAGATGACCCAGATGATCAAACTGATTACCACATTGCACACCATATAGTGAGAGTTCATCAGAAGCATGAAGATGCTCTTTCTCCTGCATTTTCTACTGCTGAGTTGAAGCGCTATATTGGATTTGCAAAAACTCTAAAACCAAAGTTGAGTTTAGAAGCCAGAAAGATGTTGGTGGATTCTTACGTTGCTCTTCGCAGAGGTGATACAACACCTGGAAGTAGGGTTGCCTATCGCATGACTGTTAGGCAGCTCGAGGCATTAATCAGGCTATCTGAAGCAATTGCTCGGAGTCATTTGGAAACTCTGGTTCAGCCACGCCATGTAAGTTTAGCAGTGAAATTACTGAAAACTTCAATAATCAGTGTGGAATCTAGTGAAATTGACCTGTCTGAGTTTCAAGAAGAAAATTATGGTGGCAATGGTGATGATAATGTAGATAATGGGACTAATCAGGATGATGCTCAACCTAGCAATGGTGCAACAGAGCCAGCTTCTGAAAATGGTGAAATGGGATCAGGTCCTGGAAATCTACAGGGGAAGAAACTTGTGATTAGTGATGAATATTTTCAGAGGGTTACCCAAGCTCTTGTCATGCGCCTCAGACAGCATGAAGAATCTGTGATGCAAGAAGGAAATGGGCTGGCGGGAATGAGGCAGAGAGAGCTAATTCGATGGTATGTGGCTCAGCAGAACGAGAAAAATAGCTATAGCTCCATGGAGGCGGCCAAAAAGGAAGTTTCGAATATCAAGGCTATTATTGAGAGTTTGATTCGAAGGGAAGGTCATTTGATAGTGGTAGATGATGGGAGGCAAGTAGATGGTGAGGTTGTTGAAGGCCAGAGGAACGACAGAATTTTAGCCGTGGCTCCAAATTATGTTGTAGATTAA 2490 43.9 MATSFVDQKAVLVENIFFDFLKSFRLNSGLGDGKPYYEAELEAMISAESNTIYIDFSHLILSNHLLHIAISHEFFRFEPYLKNACKRFVMEHNPTFIADDNPFKDINLAFFNLPLSKRLRELTTSEIGKLVSVTGVVTRTSEVRPELLHGTFKCLECGNVINNVEQQFKYTEPTICMNPTCSNRTKWALLRQDSKFADWQRVRMQETSKEIPPGSLPRSLDVILRHEMVEHARAGDTVTFTGTVVVIPDILALASPGERAECRREASDRKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVSDGRGDIDIRNRKKDADEDKQQFTAEEVDEVQRMRDTPDFFNKLVHSIAPAVFGHPDIKRAIFLMLLGGVHKFTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFSTAELKRYIGFAKTLKPKLSLEARKMLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETLVQPRHVSLAVKLLKTSIISVESSEIDLSEFQEENYGGNGDDNVDNGTNQDDAQPSNGATEPASENGEMGSGPGNLQGKKLVISDEYFQRVTQALVMRLRQHEESVMQEGNGLAGMRQRELIRWYVAQQNEKNSYSSMEAAKKEVSNIKAIIESLIRREGHLIVVDDGRQVDGEVVEGQRNDRILAVAPNYVVD 829
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 38636056 38641035 + evm.model.ptg000014l.6 HCH14g1202 559105
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1202 829 Pfam MCM OB domain 119 247 IPR033762 -
HCH14g1202 829 Gene3D - 324 670 IPR027417 -
HCH14g1202 829 Gene3D - 119 247 IPR012340 -
HCH14g1202 829 Pfam MCM6 C-terminal winged-helix domain 714 827 IPR041024 -
HCH14g1202 829 Coils Coil 773 793 - -
HCH14g1202 829 MobiDBLite consensus disorder prediction 674 699 - -
HCH14g1202 829 Gene3D - 5 115 - -
HCH14g1202 829 SUPERFAMILY Nucleic acid-binding proteins 19 249 IPR012340 -
HCH14g1202 829 MobiDBLite consensus disorder prediction 666 711 - -
HCH14g1202 829 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH14g1202 829 Pfam MCM N-terminal domain 16 112 IPR027925 -
HCH14g1202 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 654 IPR027417 -
HCH14g1202 829 FunFam DNA helicase 328 658 - -
HCH14g1202 829 CDD MCM6 346 652 - -
HCH14g1202 829 FunFam DNA helicase 712 829 - -
HCH14g1202 829 FunFam DNA helicase 146 197 - -
HCH14g1202 829 SMART mcm 115 654 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH14g1202 829 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH14g1202 829 Gene3D - 146 197 - -
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
HCH14g1202 829 Pfam MCM AAA-lid domain 568 653 IPR041562 -
HCH14g1202 829 Gene3D - 712 829 - -
HCH14g1202 829 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
HCH14g1202 829 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 11 776 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH14g1202 829 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1202 HCH-Chr14:38636056 HCH7g0533 HCH-Chr7:4090494 1.10E-98 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1202 K02542 - csv:101219775 1370.91