Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH14g1202 | ATGGCTACTTCTTTCGTAGATCAGAAGGCTGTTCTCGTCGAAAACATTTTCTTCGACTTTCTCAAGAGTTTTCGGCTCAACTCTGGACTTGGAGATGGAAAACCTTACTACGAGGCGGAGTTAGAAGCTATGATTTCTGCCGAATCTAATACCATCTACATTGATTTCTCTCACCTTATCCTCTCTAATCATCTTCTTCACATTGCCATCTCTCATGAATTTTTCAGGTTTGAACCTTATCTCAAAAACGCCTGTAAGCGCTTTGTCATGGAGCACAATCCTACTTTCATCGCTGATGATAACCCCTTCAAGGACATTAATCTCGCTTTCTTCAACCTTCCTCTTTCTAAAAGGTTGAGAGAACTCACTACTTCTGAAATTGGCAAATTAGTTTCTGTCACTGGAGTCGTCACCCGCACCAGCGAAGTCCGTCCTGAACTTCTTCATGGCACTTTTAAGTGCTTAGAATGTGGAAATGTCATCAACAATGTTGAGCAACAATTTAAGTACACTGAGCCAACCATATGCATGAATCCAACCTGTTCAAATAGAACCAAGTGGGCATTACTTCGCCAAGACAGCAAATTCGCTGATTGGCAGAGGGTCCGAATGCAGGAGACTTCTAAGGAGATACCACCTGGCTCTCTTCCCCGATCATTGGATGTTATTCTCCGCCACGAGATGGTTGAGCATGCCAGGGCTGGAGACACGGTCACATTCACAGGTACAGTGGTCGTGATACCAGATATATTGGCGTTAGCCTCTCCAGGAGAAAGAGCAGAATGCCGCAGAGAAGCTTCTGACCGCAAAAACTCTGCTGTTGGACATGAAGGAATGAGGGGCCTTCGAGCTCTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAACTCTGTTCAGGTTTCAGATGGCAGAGGGGATATTGACATCAGAAATAGGAAGAAGGATGCTGATGAAGACAAACAACAGTTCACCGCAGAAGAGGTTGATGAAGTTCAAAGAATGAGGGACACGCCTGACTTCTTCAACAAACTTGTCCATAGCATTGCACCAGCAGTCTTTGGTCATCCAGATATCAAACGAGCAATCTTTCTAATGCTCTTAGGTGGTGTCCACAAGTTTACACATGAAGGCATCAACCTTCGAGGTGATATAAATGTTTGTATAGTAGGAGATCCCAGCTGTGCAAAATCCCAGTTCCTCAAGTATACTTCAGGCATAGTGCCAAGATCAGTTTATACATCTGGAAAATCCTCTTCTGCTGCTGGATTGACTGCCACTGTAGCCAAGGAACCAGAAACAGGAGAGTTTTGTATTGAGGCTGGTGCCCTAATGCTTGCTGATAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGATATCAAGGACCAGGTTGCAATTCATGAAGCTATGGAGCAACAGACCATAAGCATTACGAAAGCAGGAATACAGGCAACACTAAATGCCAGGACATCAATTCTTGCTGCTGCAAATCCAACCGGAGGGCGCTATGACAAGTCTAAACCCCTCAAGTATAATGTGGCTCTGCCTCCTGCTATTCTTTCAAGGTTTGACCTTGTCTACGTAATGATAGATGACCCAGATGATCAAACTGATTACCACATTGCACACCATATAGTGAGAGTTCATCAGAAGCATGAAGATGCTCTTTCTCCTGCATTTTCTACTGCTGAGTTGAAGCGCTATATTGGATTTGCAAAAACTCTAAAACCAAAGTTGAGTTTAGAAGCCAGAAAGATGTTGGTGGATTCTTACGTTGCTCTTCGCAGAGGTGATACAACACCTGGAAGTAGGGTTGCCTATCGCATGACTGTTAGGCAGCTCGAGGCATTAATCAGGCTATCTGAAGCAATTGCTCGGAGTCATTTGGAAACTCTGGTTCAGCCACGCCATGTAAGTTTAGCAGTGAAATTACTGAAAACTTCAATAATCAGTGTGGAATCTAGTGAAATTGACCTGTCTGAGTTTCAAGAAGAAAATTATGGTGGCAATGGTGATGATAATGTAGATAATGGGACTAATCAGGATGATGCTCAACCTAGCAATGGTGCAACAGAGCCAGCTTCTGAAAATGGTGAAATGGGATCAGGTCCTGGAAATCTACAGGGGAAGAAACTTGTGATTAGTGATGAATATTTTCAGAGGGTTACCCAAGCTCTTGTCATGCGCCTCAGACAGCATGAAGAATCTGTGATGCAAGAAGGAAATGGGCTGGCGGGAATGAGGCAGAGAGAGCTAATTCGATGGTATGTGGCTCAGCAGAACGAGAAAAATAGCTATAGCTCCATGGAGGCGGCCAAAAAGGAAGTTTCGAATATCAAGGCTATTATTGAGAGTTTGATTCGAAGGGAAGGTCATTTGATAGTGGTAGATGATGGGAGGCAAGTAGATGGTGAGGTTGTTGAAGGCCAGAGGAACGACAGAATTTTAGCCGTGGCTCCAAATTATGTTGTAGATTAA | 2490 | 43.9 | MATSFVDQKAVLVENIFFDFLKSFRLNSGLGDGKPYYEAELEAMISAESNTIYIDFSHLILSNHLLHIAISHEFFRFEPYLKNACKRFVMEHNPTFIADDNPFKDINLAFFNLPLSKRLRELTTSEIGKLVSVTGVVTRTSEVRPELLHGTFKCLECGNVINNVEQQFKYTEPTICMNPTCSNRTKWALLRQDSKFADWQRVRMQETSKEIPPGSLPRSLDVILRHEMVEHARAGDTVTFTGTVVVIPDILALASPGERAECRREASDRKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVSDGRGDIDIRNRKKDADEDKQQFTAEEVDEVQRMRDTPDFFNKLVHSIAPAVFGHPDIKRAIFLMLLGGVHKFTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFSTAELKRYIGFAKTLKPKLSLEARKMLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETLVQPRHVSLAVKLLKTSIISVESSEIDLSEFQEENYGGNGDDNVDNGTNQDDAQPSNGATEPASENGEMGSGPGNLQGKKLVISDEYFQRVTQALVMRLRQHEESVMQEGNGLAGMRQRELIRWYVAQQNEKNSYSSMEAAKKEVSNIKAIIESLIRREGHLIVVDDGRQVDGEVVEGQRNDRILAVAPNYVVD | 829 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 38636056 | 38641035 | + | evm.model.ptg000014l.6 | HCH14g1202 | 559105 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH14g1202 | 829 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| HCH14g1202 | 829 | Gene3D | - | 324 | 670 | IPR027417 | - | |
| HCH14g1202 | 829 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| HCH14g1202 | 829 | Pfam | MCM6 C-terminal winged-helix domain | 714 | 827 | IPR041024 | - | |
| HCH14g1202 | 829 | Coils | Coil | 773 | 793 | - | - | |
| HCH14g1202 | 829 | MobiDBLite | consensus disorder prediction | 674 | 699 | - | - | |
| HCH14g1202 | 829 | Gene3D | - | 5 | 115 | - | - | |
| HCH14g1202 | 829 | SUPERFAMILY | Nucleic acid-binding proteins | 19 | 249 | IPR012340 | - | |
| HCH14g1202 | 829 | MobiDBLite | consensus disorder prediction | 666 | 711 | - | - | |
| HCH14g1202 | 829 | ProSiteProfiles | MCM family domain profile. | 343 | 549 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH14g1202 | 829 | Pfam | MCM N-terminal domain | 16 | 112 | IPR027925 | - | |
| HCH14g1202 | 829 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 654 | IPR027417 | - | |
| HCH14g1202 | 829 | FunFam | DNA helicase | 328 | 658 | - | - | |
| HCH14g1202 | 829 | CDD | MCM6 | 346 | 652 | - | - | |
| HCH14g1202 | 829 | FunFam | DNA helicase | 712 | 829 | - | - | |
| HCH14g1202 | 829 | FunFam | DNA helicase | 146 | 197 | - | - | |
| HCH14g1202 | 829 | SMART | mcm | 115 | 654 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH14g1202 | 829 | Pfam | MCM P-loop domain | 331 | 553 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH14g1202 | 829 | Gene3D | - | 146 | 197 | - | - | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH14g1202 | 829 | Pfam | MCM AAA-lid domain | 568 | 653 | IPR041562 | - | |
| HCH14g1202 | 829 | Gene3D | - | 712 | 829 | - | - | |
| HCH14g1202 | 829 | ProSitePatterns | MCM family signature. | 452 | 460 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| HCH14g1202 | 829 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 776 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 444 | 458 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 384 | 399 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 472 | 485 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 523 | 531 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH14g1202 | 829 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 496 | 508 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH14g1202 | HCH-Chr14:38636056 | HCH7g0533 | HCH-Chr7:4090494 | 1.10E-98 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH14g1202 | K02542 | - | csv:101219775 | 1370.91 |