Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH14g1204 ATGGCTGCAGCTCATAACTTGAAGTTCCTACTCTCATATCTAATATTTGCATTGCTCCCTCCTTTGCCTTTTGTTTCTTCTCACTACCTATCCCTCAAAACACAAGCTTCAATTCTAGTCTCGATCAAACAATCTTTTGAACATCCCAATCCTTTGCTAGACAGTTGGAATAAGTCTAATTACTCCTTCCTATGCTCTTGGACTGGAATTCAATGCGATGGCATGAATAAATCAGTAATTTCACTGGACATTTCCAATTCCAACATATCCGGCTCTCTATCTCCTGCAGTCACACAACTCCGGACACTTGTTTTTCTTTCAGTCTCTGGAAACAGTTTTTCAGGAACCTTTCCTCCTCAAACTCACAGGCTATCAAAACTTCAGTTTCTCAACATTTCTAACAATCAGTTCAGCGGAAAACTCGAGTGGGAGTATGCTCAGTTGAAACAACTGGAGGTATTTGATGCTTATAACAACAATTTCAATGGGACGCTTCCAATAGGCGTGACTCAACTTCACAGTTTAAAGCACTTAAACTTTGGCGGGAATTACTTCACAGGTAAAATCCCTCCAAGTTATGGTGAGATGGATCAGCTCAGGCATCTCTCACTTGCAGGGAATGATTTGGATGGTTTCCTTCCAATTGAGCTTGGTAATCTTACAAATCTCCAGCGGCTTTATCTTGGATACTTCAATCAGTTTGAAGGTGGAATACCATCTCAACTTGGAAAACTTGTGAATTTGAATCATCTTGATCTTGCGAGTTGTGGTTTACAAGGTCCAATCCCAATCGAGTTAGGAAATCTAAACAAGTTAGATACTCTCTTCTTGCAAACAAATCAGCTAAGTGGTGCAATTCCTCCCCAGTTGGGCAACTTGAGTAGCTTGATTTCACTTGACCTCTCAAATAATCAATTAACAGGAGAGATCCCAGTTGAATTTGGTAGCCTTGGCGAGCTTTCACTCTTGAACTTATTCATCAACAAGTTTCATGGAGAGATTCCTCGAGTTCTTGGTCATCTTCCTAAGTTGGAAGTTTTGAAGCTCTGGCAAAATAATTTCACCGGAGCCATTCCATCAAACCTTGGTCAGAATGGTAGACTAATGGAGCTTGACTTGTCAACTAACAAGCTCACTGGAATGATCCCCGAGTCTCTATGCTTTGGAAGAAGACTCAAGATCTTGATTTTACTCAATAATTTTCTTTTTGGACCTCTACCACATGATCTTGGCCAATGCCAGACACTTGTAAGAGTTCGTATCGGTCAGAATTATTTGACAGGATTAATTCCAGACGGGCTGCTTTACTTGCCTGAGCTCTCTCTCATGGAATTGCAGAACAATTACCTCAGTGGATGGCTTCCTCAAGAGATTCACAGAGTTCCCTCCAAACTTGGTCAGCTCAACCTTTCTAACAATCGTTTTTCTGGTTCTCTTCCTAATTCTATTGGAAACTTCACCAACTTGCAGATTCTGCTTTTGAGTGGAAACCACTTGACAGGAGAGATTCCTTCTGAAATAGGAAAACTCAGAATTCTTCTGAAGCTAGATATGAGTAGAAACAACCTTTCTGGTAGTATCCCTCCAGAATTAGGTAATTGTGCATCACTCGCATACATAGATTTGAGCCTAAATCAGCTAACTGCTCAAATCCCAGTTCAACTTTCACAAATTCACATCTTAAATTATCTCAACTTGTCTTGGAACTATCTAAACCAGAGCCTTCCCAAGGAAATTGGATCCATCAAGAGCTTGACTTGTGCGGATTTCTCCCACAATAACTTATCTGGTTATATCCCGGAAAGTGGACAGTATTTACTCTTCAATTCCACATCCTTCGTGGGTAACCCTCAACTCTGTGGATCATTCTTGAACGAGTGCAATGAATCAGCATCGGCATCAAAACCTGGAAGCCAAAGAGACTCCAATTCCAAAGTTTCCGGAAAATATAAGCTTGCGTTTGCGCTAGGACTATTAATGTGTTCAGTAATATTTGCAACTCTGGCAGTAATTCAGACAAGGAAGGCGAGAAAGAAATCAACATCTTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTAAAAGCAAGGACATCTTGGAATGCATAAAAGATAACAATATAATTGGGAAAGGTGGAGCTGGTGTTGTGTACAAAGGAATCATGCCGAGTGGAGAACAAGTAGCCATAAAGAAGCTGTTGGCCATAAGCAAAGGTTCCTCTCATGACAATGGTCTCTCAGCGGAAATACAAACGCTGGGTAAAATCCGGCATAGGAACATCGTCAGATTGCTCGCCTTTTGCTCGAATAAGGAAACAAATCTACTCGTTTACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTTCATGGGAAAAGAGGTAGTTGTCTAAAATGGGGAACAAGACTTAAGATAGCAATAGAAGCAGCCAAAGGCCTTTGCTATTTGCACCATGATTGTTCACCACTCATAATTCATAGGGACGTCAAGTCAAACAACATTTTGCTTAATTCAGAATTCGAGGCTCACGTAGCAGATTTCGGGTTAGCCAAGTTCTTGCAGGACAATGGAACATCAGAGTGCATGTCTGCCATTGCCGGTTCTTACGGATATATTGCTCCAGAGTATGCATACACATTGAAAGTGGACGAGAAGAGTGACGTTTACAGCTTTGGAGTGGTATTGTTAGAGCTGATAACAGGGCGAAAGCCAGTTGGTAATTTTGGGGAAGATGGTTTGGACATTGTCCAATGGACTAAGATGGAAACCAACTCAAGCAAAGAAGGAGTGGTTAAGATATTGGATCAAAGATTGAATATACCTATAAATGAAGCAAAGCAAGTCTTTTTTGTAGCTATGTTATGTGTTCAAGAACACAGCGTGGAGCGGCCAACGATGAGAGAAGTTGTTCAAATGCTGGCACAGGCTCACCAACCTAATACCTTCCACATGCATTGA 2958 41.21 MAAAHNLKFLLSYLIFALLPPLPFVSSHYLSLKTQASILVSIKQSFEHPNPLLDSWNKSNYSFLCSWTGIQCDGMNKSVISLDISNSNISGSLSPAVTQLRTLVFLSVSGNSFSGTFPPQTHRLSKLQFLNISNNQFSGKLEWEYAQLKQLEVFDAYNNNFNGTLPIGVTQLHSLKHLNFGGNYFTGKIPPSYGEMDQLRHLSLAGNDLDGFLPIELGNLTNLQRLYLGYFNQFEGGIPSQLGKLVNLNHLDLASCGLQGPIPIELGNLNKLDTLFLQTNQLSGAIPPQLGNLSSLISLDLSNNQLTGEIPVEFGSLGELSLLNLFINKFHGEIPRVLGHLPKLEVLKLWQNNFTGAIPSNLGQNGRLMELDLSTNKLTGMIPESLCFGRRLKILILLNNFLFGPLPHDLGQCQTLVRVRIGQNYLTGLIPDGLLYLPELSLMELQNNYLSGWLPQEIHRVPSKLGQLNLSNNRFSGSLPNSIGNFTNLQILLLSGNHLTGEIPSEIGKLRILLKLDMSRNNLSGSIPPELGNCASLAYIDLSLNQLTAQIPVQLSQIHILNYLNLSWNYLNQSLPKEIGSIKSLTCADFSHNNLSGYIPESGQYLLFNSTSFVGNPQLCGSFLNECNESASASKPGSQRDSNSKVSGKYKLAFALGLLMCSVIFATLAVIQTRKARKKSTSWKLAAFQKLEFKSKDILECIKDNNIIGKGGAGVVYKGIMPSGEQVAIKKLLAISKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKETNLLVYEYMPNGSLGEVLHGKRGSCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWTKMETNSSKEGVVKILDQRLNIPINEAKQVFFVAMLCVQEHSVERPTMREVVQMLAQAHQPNTFHMH 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 38644274 38648111 - evm.model.ptg000014l.4 HCH14g1204 559107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH14g1204 985 Gene3D Ribonuclease Inhibitor 341 631 IPR032675 -
HCH14g1204 985 ProSiteProfiles Protein kinase domain profile. 702 985 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1204 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 233 338 - -
HCH14g1204 985 Gene3D Ribonuclease Inhibitor 32 193 IPR032675 -
HCH14g1204 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 780 985 - -
HCH14g1204 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 977 IPR050647 -
HCH14g1204 985 Gene3D Ribonuclease Inhibitor 272 340 IPR032675 -
HCH14g1204 985 Gene3D Ribonuclease Inhibitor 195 271 IPR032675 -
HCH14g1204 985 SUPERFAMILY Protein kinase-like (PK-like) 696 973 IPR011009 -
HCH14g1204 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 145 232 - -
HCH14g1204 985 Gene3D Phosphorylase Kinase; domain 1 666 779 - -
HCH14g1204 985 SMART serkin_6 702 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH14g1204 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 345 631 - -
HCH14g1204 985 SUPERFAMILY L domain-like 364 621 - -
HCH14g1204 985 Pfam Protein tyrosine and serine/threonine kinase 705 973 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g1204 985 Gene3D Transferase(Phosphotransferase) domain 1 780 984 - -
HCH14g1204 985 Pfam Leucine Rich Repeat 465 486 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 368 387 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 198 220 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 247 269 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 174 194 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 295 317 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 513 534 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 126 142 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 Pfam Leucine Rich Repeat 488 510 IPR001611 GO:0005515(InterPro)
HCH14g1204 985 SUPERFAMILY RNI-like 81 403 - -
HCH14g1204 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 34 144 - -
HCH14g1204 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 671 779 - -
HCH14g1204 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH14g1204 985 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
HCH14g1204 985 SMART LRR_typ_2 269 292 IPR003591 -
HCH14g1204 985 SMART LRR_typ_2 510 534 IPR003591 -
HCH14g1204 985 SMART LRR_typ_2 196 220 IPR003591 -
HCH14g1204 985 SMART LRR_typ_2 486 509 IPR003591 -
HCH14g1204 985 SMART LRR_typ_2 341 365 IPR003591 -
HCH14g1204 985 SMART LRR_typ_2 293 317 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0820 HCH-Chr11:38634970 HCH14g1204 HCH-Chr14:38644274 1.60E-144 dispersed
HCH12g0112 HCH-Chr12:596364 HCH14g1204 HCH-Chr14:38644274 4.60E-117 dispersed
HCH14g0408 HCH-Chr14:33088540 HCH14g1204 HCH-Chr14:38644274 1.80E-113 dispersed
HCH14g0944 HCH-Chr14:36975423 HCH14g1204 HCH-Chr14:38644274 2.10E-08 dispersed
HCH14g1204 HCH-Chr14:38644274 HCH6g1438 HCH-Chr6:48138116 2.80E-85 dispersed
HCH14g1204 HCH-Chr14:38644274 HCH14g0409 HCH-Chr14:33102975 7.90E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81261 PF07714 PK_Tyr_Ser-Thr 1.00E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH14g1204 - - - 0.0