Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0009 | ATGTCTATTACTGCTGCCGTCAAAGCGATGAAGTCGTCAAAGTTTATATCTTGGAAGCCGACGGGTACGCTTCAGCAAACCCTAGCAGGATGTCTCGAGCTAAGTGGGATAACTCTGCACTCAGGGAAGATTTCAATAGTGAAATTATGGCCAGAATTTGCTGGAAAAGGGAGGTACTTTGATTTCAAGTCCAAATTTATTCCAGCGTCAATCGATTATACCCAAGATTCGCCTCTATGTACCACCCTCTCTAAAGACGGGTTTAAAATTCGAACAGTTGAGCACTTGCTTTCCGCGCTCGAGGCTACGGGTGTTGATAATTGTAGGATCGAGATTTCTAATTTAGATACCGAAGACACCGAAGTTGAGGTTCCCATTTTTGATGGGTCTGCGGGTGAATGGGTGGATGCCATAGACAAGGTTGGTCTTAAGTTAGCTGTAGACCAGCGTGGCAACTGTTGTGAAAAAATGGCACCTTATATAAATGAACCAGTCCATGTGTGGAGGAACGATGGTTTTCTTGTTGCTTTCCCAGCCCCAGCAGTTCACATTACGTGTGGAATTGACTTTCCTCAGGTGCGTGACATTGGCTGCCAATGGTTTTCTACAGCCTCCTTGGACAACACATTCTATGTCAAGCAGATCGCCTCATCAAGAACCTTTTGCATTTACGAGGAGGTAGAGCAAATGCGCAAAATGGGACTCATAAAAGGAGGCTCAACAAAAAATGCTCTAGTTTGCAGTGCCAGTAATGGTTGGATGAATCCCCCATTGCGCTTCCATGATGAACCTTGTCGCCACAAGGTTTTAGATCTGGTTGGTGATTTGTCACTTTTTGCACGATTTGGCAGTCAAGGGCTTCCTGTAGCGCACACAGTGGTTTACAAGGGGGGTCATGCTTTACATGCTGATTTCTTACGCCACCTATCAGATATCACTCGAGAGGATGAGTAG | 954 | 45.39 | MSITAAVKAMKSSKFISWKPTGTLQQTLAGCLELSGITLHSGKISIVKLWPEFAGKGRYFDFKSKFIPASIDYTQDSPLCTTLSKDGFKIRTVEHLLSALEATGVDNCRIEISNLDTEDTEVEVPIFDGSAGEWVDAIDKVGLKLAVDQRGNCCEKMAPYINEPVHVWRNDGFLVAFPAPAVHITCGIDFPQVRDIGCQWFSTASLDNTFYVKQIASSRTFCIYEEVEQMRKMGLIKGGSTKNALVCSASNGWMNPPLRFHDEPCRHKVLDLVGDLSLFARFGSQGLPVAHTVVYKGGHALHADFLRHLSDITREDE | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 754660 | 788588 | + | evm.model.ptg000006l.1279 | HCH1g0009 | 538028 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0009 | 317 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 163 | 309 | IPR020568 | - | |
HCH1g0009 | 317 | NCBIfam | UDP-3-O-acyl-N-acetylglucosamine deacetylase | 25 | 312 | IPR004463 | GO:0008759(InterPro)|GO:0009245(InterPro) | |
HCH1g0009 | 317 | PANTHER | UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED | 1 | 315 | IPR004463 | GO:0008759(InterPro)|GO:0009245(InterPro) | |
HCH1g0009 | 317 | Pfam | UDP-3-O-acyl N-acetylglycosamine deacetylase | 25 | 309 | IPR004463 | GO:0008759(InterPro)|GO:0009245(InterPro) | |
HCH1g0009 | 317 | Gene3D | lpxc deacetylase, domain 1 | 23 | 150 | IPR015870 | GO:0008759(InterPro)|GO:0009245(InterPro) | |
HCH1g0009 | 317 | Gene3D | lpxc deacetylase, domain 2 | 160 | 317 | IPR011334 | GO:0008759(InterPro)|GO:0009245(InterPro) | |
HCH1g0009 | 317 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 24 | 144 | IPR020568 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0009 | K02535 | - | csv:101205101 | 508.449 |