Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0009 ATGTCTATTACTGCTGCCGTCAAAGCGATGAAGTCGTCAAAGTTTATATCTTGGAAGCCGACGGGTACGCTTCAGCAAACCCTAGCAGGATGTCTCGAGCTAAGTGGGATAACTCTGCACTCAGGGAAGATTTCAATAGTGAAATTATGGCCAGAATTTGCTGGAAAAGGGAGGTACTTTGATTTCAAGTCCAAATTTATTCCAGCGTCAATCGATTATACCCAAGATTCGCCTCTATGTACCACCCTCTCTAAAGACGGGTTTAAAATTCGAACAGTTGAGCACTTGCTTTCCGCGCTCGAGGCTACGGGTGTTGATAATTGTAGGATCGAGATTTCTAATTTAGATACCGAAGACACCGAAGTTGAGGTTCCCATTTTTGATGGGTCTGCGGGTGAATGGGTGGATGCCATAGACAAGGTTGGTCTTAAGTTAGCTGTAGACCAGCGTGGCAACTGTTGTGAAAAAATGGCACCTTATATAAATGAACCAGTCCATGTGTGGAGGAACGATGGTTTTCTTGTTGCTTTCCCAGCCCCAGCAGTTCACATTACGTGTGGAATTGACTTTCCTCAGGTGCGTGACATTGGCTGCCAATGGTTTTCTACAGCCTCCTTGGACAACACATTCTATGTCAAGCAGATCGCCTCATCAAGAACCTTTTGCATTTACGAGGAGGTAGAGCAAATGCGCAAAATGGGACTCATAAAAGGAGGCTCAACAAAAAATGCTCTAGTTTGCAGTGCCAGTAATGGTTGGATGAATCCCCCATTGCGCTTCCATGATGAACCTTGTCGCCACAAGGTTTTAGATCTGGTTGGTGATTTGTCACTTTTTGCACGATTTGGCAGTCAAGGGCTTCCTGTAGCGCACACAGTGGTTTACAAGGGGGGTCATGCTTTACATGCTGATTTCTTACGCCACCTATCAGATATCACTCGAGAGGATGAGTAG 954 45.39 MSITAAVKAMKSSKFISWKPTGTLQQTLAGCLELSGITLHSGKISIVKLWPEFAGKGRYFDFKSKFIPASIDYTQDSPLCTTLSKDGFKIRTVEHLLSALEATGVDNCRIEISNLDTEDTEVEVPIFDGSAGEWVDAIDKVGLKLAVDQRGNCCEKMAPYINEPVHVWRNDGFLVAFPAPAVHITCGIDFPQVRDIGCQWFSTASLDNTFYVKQIASSRTFCIYEEVEQMRKMGLIKGGSTKNALVCSASNGWMNPPLRFHDEPCRHKVLDLVGDLSLFARFGSQGLPVAHTVVYKGGHALHADFLRHLSDITREDE 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 754660 788588 + evm.model.ptg000006l.1279 HCH1g0009 538028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0009 317 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 309 IPR020568 -
HCH1g0009 317 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 25 312 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
HCH1g0009 317 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 1 315 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
HCH1g0009 317 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 25 309 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
HCH1g0009 317 Gene3D lpxc deacetylase, domain 1 23 150 IPR015870 GO:0008759(InterPro)|GO:0009245(InterPro)
HCH1g0009 317 Gene3D lpxc deacetylase, domain 2 160 317 IPR011334 GO:0008759(InterPro)|GO:0009245(InterPro)
HCH1g0009 317 SUPERFAMILY Ribosomal protein S5 domain 2-like 24 144 IPR020568 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0009 K02535 - csv:101205101 508.449