Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0015 ATGGCTTCTTTGTCTATTGCTTCGAAATCCAACCAAAAAGATGATGATCAGAATGTTCTGCAGAAGCATGCTGCCTTTTTCGATAGAAATCATGACGGCGTCGTTTACCCTTGGGAGACTTTCCAAGGTTTTCGTGCGATTGGGTGTGGTTTCTTGTTGTCCACAGCCGCGGCCGTCTTTATTAATATTGGCCTCAGCGGAAAAACTCGCCCGGGAAAATTCCCTTCTCCACTGTTCCCAATTGAAGTAAAGAATATCAAACTAGGCAAACATGGAAGTGATTCTGGAGTCTACGACACTGAGGGAAGGTTTATTCCTTCCAAATTTGAAGATATCTTTAGGAAGCATGCACAAGAACACCCCGACGCCTTAACATATAAAGAACTTAAGGCCATGCTCAAGGCGAACAGAGAGCCCAAGAACTATGCAGGATGGCTTGGTAGCTGGGCGGAGTGGAAGGTTCTGTATGATATTGGCAAAGACGAAAATGGTTTGCTGCACAAACAAACCATTAAGGCTGTGTACGACGGAAGCTTATTTGAACATTTGGAGAAATCGAGAGCATCTAAAGCACAAAAACAGAAAGCATAA 591 43.82 MASLSIASKSNQKDDDQNVLQKHAAFFDRNHDGVVYPWETFQGFRAIGCGFLLSTAAAVFINIGLSGKTRPGKFPSPLFPIEVKNIKLGKHGSDSGVYDTEGRFIPSKFEDIFRKHAQEHPDALTYKELKAMLKANREPKNYAGWLGSWAEWKVLYDIGKDENGLLHKQTIKAVYDGSLFEHLEKSRASKAQKQKA 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1049428 1052251 + evm.model.ptg000006l.1273 HCH1g0015 538034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0015 196 PANTHER PEROXYGENASE 3-RELATED 11 191 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
HCH1g0015 196 Pfam Caleosin related protein 16 183 IPR007736 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0015 K17991 - - rcu:8277337 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0015 HCH-Chr1:1049428 HCH6g1469 HCH-Chr6:48343499 5.60E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0015 . 15 195 Pollen Coat Proteome AT1G23240 57.5 2.0e-60 229.2
HCH1g0015 . 15 195 Pollen Coat Proteome AT1G23240 57.5 2.0e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36