Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0021 ATGACGAAGTCCAAGAGTTTCCTTCATAATCTCATCAAACCATTCAAAATCGGTTCCTCAAGAGAGAGCCAGAACGAGGAAGATTTGGAGCAAATTGCAGCCAAAGAACAGAAACTTATTCCTTTCGAAACTTTGGTTGAAGCTACCAATAATTTTCACCCAAATCATAAGCTCGGCGAAGGCGGGTTTGGACCTGTTTACAAGGGAAAGTTGAAGGATGGAAGAGAGATTGCCGTTAAGAAGTTATCACATGGTTCAAACCAGGGGAGGAGAGAGTTTATGACTGAGGCTAAATTACTGGCTCGGGTGCAGCACCGGAATGTAGTTAATTTGTTAGGATACTGCGCGCATGGTGCCGAGAAACTACTTGTTTATGAGTATGTCGTCAATGAGAGTCTTGATAAACTTCTCTTCAAATCTAGCAGACGAGAAGAGCTTGATTGGAAGAGGAGGTATGACATAATCTTTGGCATAGCACGAGGCTTGCAATACCTTCATGTAGACTCACATAATATCATTATCCATCGTGACATTAAGGCTAGTAATGTTTTATTGGATGAAAAATGGGTGCCGAAGATTGCTGATTTTGGCATGGCACGTCTCTTCCCTGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACCAATGGATATATGGCTCCAGAATATGTCATGCATGGACATCTATCAGTAAAAGCAGATGTTTTTAGCTTTGGCGTTTTGATTTTGGAACTCATAAGTGGCCAGCGGAACTCCTCATTTAGTTCTTTTGTAGATGCTCAGAATCTACTTGATTGGGCTTATAAGCTATACAAGAAGGGCAGGAGCTTGGAGATCGTGGACCCAACATTGGCAACCTCAGCTGATCCTGAACAAGTGGCAATGTGTGTTCAGATAGGATTGCTTTGCACACAAGGCGATCCACATTTACGACCGACCATGCCACGTGTAGTCGTGATGCTTTCAAGGAGACCTGCTACTTTGGAAGAACCAACGAGACCGGGAGTACCTGGTTCTCGGTACAGAAGATCTCGTAGACCTACTGCATCCTTCTCTACTGCTGGAACTTCTGGTGTATCCGATTCCTCTTCTTCGACCTCTAATTCCATTACTAGAACTATAACTGCAACAGCTAGTGCTACTGCTTCTACTTCAGCTAGTGCTACTGCTTCTACTTCAGCTTCAGCTTCAGCTTCAGATAGTCGAAGATTAGATACTCGTGGCAAACGTCCCATGGAAGGTTAG 1248 43.67 MTKSKSFLHNLIKPFKIGSSRESQNEEDLEQIAAKEQKLIPFETLVEATNNFHPNHKLGEGGFGPVYKGKLKDGREIAVKKLSHGSNQGRREFMTEAKLLARVQHRNVVNLLGYCAHGAEKLLVYEYVVNESLDKLLFKSSRREELDWKRRYDIIFGIARGLQYLHVDSHNIIIHRDIKASNVLLDEKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSFGVLILELISGQRNSSFSSFVDAQNLLDWAYKLYKKGRSLEIVDPTLATSADPEQVAMCVQIGLLCTQGDPHLRPTMPRVVVMLSRRPATLEEPTRPGVPGSRYRRSRRPTASFSTAGTSGVSDSSSSTSNSITRTITATASATASTSASATASTSASASASDSRRLDTRGKRPMEG 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1453031 1456313 - evm.model.ptg000006l.1267 HCH1g0021 538040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0021 415 CDD STKc_IRAK 58 324 - -
HCH1g0021 415 MobiDBLite consensus disorder prediction 346 402 - -
HCH1g0021 415 SUPERFAMILY Protein kinase-like (PK-like) 38 342 IPR011009 -
HCH1g0021 415 SMART serkin_6 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0021 415 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0021 415 MobiDBLite consensus disorder prediction 326 415 - -
HCH1g0021 415 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
HCH1g0021 415 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
HCH1g0021 415 FunFam Cysteine-rich receptor-like protein kinase 10 129 334 - -
HCH1g0021 415 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 336 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH1g0021 415 Gene3D Transferase(Phosphotransferase) domain 1 129 332 - -
HCH1g0021 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0021 415 Pfam Protein tyrosine and serine/threonine kinase 55 320 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0021 HCH-Chr1:1453031 HCH3g0596 HCH-Chr3:4100816 1.90E-91 dispersed
HCH1g0021 HCH-Chr1:1453031 HCH14g0858 HCH-Chr14:36383985 8.60E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81262 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0021 - - - 0.0