Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0025 | ATGAGCAATCGGAGGAGTCTTCTTCGAATTCAAGTGCGGCGAGGAATTAATCTCGCCATCCGTGACACCGCTACTCGCAGCAGCGATCCTTACGTCGTCATCTCTACGGGTCAACAGAAATTCAAAACTCGTACGGTGAAAAGAAATTGCAACCCCGAATGGAATGAAGAATTCACGCTTTCGATTACGGATCTTAACGCTCCAATTACTTTAAAAGTGTTTGATAAAGATAGATTTACGAAAGATGATGTTATGGGTGAAGCCGAAATCGATATAAACCCGTACATTGAGTGTTTAAATATGGGTTTGGAAAATCTGCCGAATGGGTGTGTGGTGAAAAGAGTTCAGCCAAGCAGGGAAAATTGTCTTTCAGATGAGAGCGAATGTGTTTGGAATCATGGTAAAATCATCCAAGATATGACTCTCAGATTGCAAAAGGTTGAATGTGGAGAAGTCATGATTCAGATTGAATTACTCAATTCTTCTGGGGTTAGAGGCTCAAGAATGAATTCTCTAAGCTGA | 522 | 41.19 | MSNRRSLLRIQVRRGINLAIRDTATRSSDPYVVISTGQQKFKTRTVKRNCNPEWNEEFTLSITDLNAPITLKVFDKDRFTKDDVMGEAEIDINPYIECLNMGLENLPNGCVVKRVQPSRENCLSDESECVWNHGKIIQDMTLRLQKVECGEVMIQIELLNSSGVRGSRMNSLS | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1745006 | 1747237 | + | evm.model.ptg000006l.1263 | HCH1g0025 | 538044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0025 | 173 | Pfam | C2 domain | 7 | 94 | IPR000008 | - | |
HCH1g0025 | 173 | Gene3D | C2 domain | 2 | 170 | IPR035892 | - | |
HCH1g0025 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 108 | IPR000008 | - | |
HCH1g0025 | 173 | CDD | C2_ArfGAP | 7 | 150 | - | - | |
HCH1g0025 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 2 | 164 | IPR044562 | - | |
HCH1g0025 | 173 | SMART | C2_3c | 7 | 104 | IPR000008 | - | |
HCH1g0025 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 102 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0025 | HCH-Chr1:1745006 | HCH3g0211 | HCH-Chr3:1352552 | 3.60E-49 | dispersed | |
HCH1g0025 | HCH-Chr1:1745006 | HCH10g1333 | HCH-Chr10:45866980 | 5.60E-58 | wgd |
Pathway information
