Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0025 ATGAGCAATCGGAGGAGTCTTCTTCGAATTCAAGTGCGGCGAGGAATTAATCTCGCCATCCGTGACACCGCTACTCGCAGCAGCGATCCTTACGTCGTCATCTCTACGGGTCAACAGAAATTCAAAACTCGTACGGTGAAAAGAAATTGCAACCCCGAATGGAATGAAGAATTCACGCTTTCGATTACGGATCTTAACGCTCCAATTACTTTAAAAGTGTTTGATAAAGATAGATTTACGAAAGATGATGTTATGGGTGAAGCCGAAATCGATATAAACCCGTACATTGAGTGTTTAAATATGGGTTTGGAAAATCTGCCGAATGGGTGTGTGGTGAAAAGAGTTCAGCCAAGCAGGGAAAATTGTCTTTCAGATGAGAGCGAATGTGTTTGGAATCATGGTAAAATCATCCAAGATATGACTCTCAGATTGCAAAAGGTTGAATGTGGAGAAGTCATGATTCAGATTGAATTACTCAATTCTTCTGGGGTTAGAGGCTCAAGAATGAATTCTCTAAGCTGA 522 41.19 MSNRRSLLRIQVRRGINLAIRDTATRSSDPYVVISTGQQKFKTRTVKRNCNPEWNEEFTLSITDLNAPITLKVFDKDRFTKDDVMGEAEIDINPYIECLNMGLENLPNGCVVKRVQPSRENCLSDESECVWNHGKIIQDMTLRLQKVECGEVMIQIELLNSSGVRGSRMNSLS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1745006 1747237 + evm.model.ptg000006l.1263 HCH1g0025 538044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0025 173 Pfam C2 domain 7 94 IPR000008 -
HCH1g0025 173 Gene3D C2 domain 2 170 IPR035892 -
HCH1g0025 173 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
HCH1g0025 173 CDD C2_ArfGAP 7 150 - -
HCH1g0025 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 2 164 IPR044562 -
HCH1g0025 173 SMART C2_3c 7 104 IPR000008 -
HCH1g0025 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 102 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0025 HCH-Chr1:1745006 HCH3g0211 HCH-Chr3:1352552 3.60E-49 dispersed
HCH1g0025 HCH-Chr1:1745006 HCH10g1333 HCH-Chr10:45866980 5.60E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0025 - - - 0.0