Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0037 ATGGAAGCAAATGGAAGCAGCAACAACATGCAATCTCACTGTGTGGAAATTCATCAAGTAATTCCACCACCCCATCGAAGCACCTTTCAAAAGCTTGGAAATAGACTCAAGGAAACCTTCTTCCCTGATGATCCACTTCGTCAATTCAAAGGACAGTCTCCCAGAAAGAAATGCTTGCTTTCTGCTCAATATTTCTTCCCCATTCTTCAATGGGGTCCTCATTACAACCTTAAGCTTTTCAAATCTGATATCGTTGCTGGTCTCACCATTGCCAGCTTAGCCATTCCACAGGGTATTAGCTATGCCAAGCTTGCAAATTTACCTCCCATTGTTGGGCTTTACTCGAGCTTTGTTCCTCCTCTGGTATATGCTGTTCTTGGAAGCTCAAGAGATCTTGCAGTGGGGCCTGTCTCAATAGCTTCTCTAATACTGGGATCGATGTTGAGGCAAGAAGTATCTCCCATCAAAGATCCCATCTTATTTCTTCAACTTGCTTTCACTTCCACTTTCTTCGCTGGTGTCTTCCAATCTTCCCTTGGATTCTTAAGACTTGGGTTTATAATTGATTTTCTGTCAAAGGCAACGCTGATCGGTTTCATGGCTGGAGCCGCCATTATAGTCTCTCTTCAGCAGCTCAAGAGCCTCCTTGGGATTACCCATTTCACTACACAAATGGGTTTGGTTCCTGTTTTGAGTTCCGTTTTTCATCATACCCACGAGTGGTCATGGCAGACTATACTCATGGGTGTTTGTTTCCTTCTCTTCCTACTATTGGCCAGACACATTAGTTTGAGAAAGCCAAAACTATTCTGGGTGTCAGCCGGAGCTCCTCTGTTATCTGTGATTCTCTCAACAATACTGGTTTTTGCGTTCAAAGCTGATCGTCACGGCATCAGTATAATAGGAAAATTGCAGGAAGGACTGAATCCACCTTCATGGAATATGCTTCATTTTCAAAGAGCACACCTTGGTCTTGTGATCAAGACTGGCCTTATTACTGGCATTATCTCTCTCACCGAAGGAATTGCAGTGGGCCGTACATTTGCTGCTCTGAAGGACTATCGGGTGGATGGAAACAAAGAGATGATAGCAATTGGGCTTATGAATGTTGTTGGATCTTTCACTTCATGCTACGTCACCACAGGTGCATTTTCAAGATCGGCAGTGAATCACAACGCGGGAGCGAAAACAGCAGTATCAAACATAATAATGTCAGTGACAATAATGGTAACGCTGCTTTTCCTGATGCCCCTGTTTCAATACACACCAAATCTTGTATTGGCGGCGATCATAGTCACTGCCGTTGTCGGTCTTATTGATCTCCCTGCTGCCTACAACATCTGGAAAGTTGATAAGTTTGATTTTGTTGTCATGCTTTGCGCATTCTTCGGAGTCATTCTTATCTCTGTCCAACACGGTCTCGCCATTGCTGTTGGGATATCCATATTCAAGATTATCCTGCAAATAACAAGGCCAAAAACGGTGTCGTTGGGGAACATACCCGGAACAGACATCTATCGAAATCTTGACCAATACAAGGACTCGTTGAGAATCCCAGGCTTCCTTGTTTTAAGCATTGAAGCTCCAATCAATTTTGCTAATACCACTTATCTTAATGAAAGGATTTTGAGATGGATTGAAGAATATGAGGCAGAAGATGCTGTTAAAATGGGCTCAACCCTTCGATTTCTGATCTTAGAATTGTCAGCTGTGAGTGCCATAGACACAAGTGGAGTGTTACTCTTCAAGGATTTAAGAAAAGCCATGGAAAAGAAAGGTGTTGAGCTTGTTTTAGTGAACCCATTGGGAGAAGTTATGGAAAAATTACAAAAATCTGATGAAGATGGTGAATTCATGAAGCCAGATAATCTTTATCTATCCGTGGGAGAGGCCGTCTCATCGTTATCATCAATGACAAAAGAACAAACTTCAACCATGTATGAAGAGAGAAATAACAACTGA 1962 42.46 MEANGSSNNMQSHCVEIHQVIPPPHRSTFQKLGNRLKETFFPDDPLRQFKGQSPRKKCLLSAQYFFPILQWGPHYNLKLFKSDIVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPIKDPILFLQLAFTSTFFAGVFQSSLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTTQMGLVPVLSSVFHHTHEWSWQTILMGVCFLLFLLLARHISLRKPKLFWVSAGAPLLSVILSTILVFAFKADRHGISIIGKLQEGLNPPSWNMLHFQRAHLGLVIKTGLITGIISLTEGIAVGRTFAALKDYRVDGNKEMIAIGLMNVVGSFTSCYVTTGAFSRSAVNHNAGAKTAVSNIIMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVVGLIDLPAAYNIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVSLGNIPGTDIYRNLDQYKDSLRIPGFLVLSIEAPINFANTTYLNERILRWIEEYEAEDAVKMGSTLRFLILELSAVSAIDTSGVLLFKDLRKAMEKKGVELVLVNPLGEVMEKLQKSDEDGEFMKPDNLYLSVGEAVSSLSSMTKEQTSTMYEERNNN 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2625862 2639244 - evm.model.ptg000006l.1251 HCH1g0037 538056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0037 653 PANTHER SULFATE TRANSPORTER 35 634 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0037 653 CDD STAS_SulP_like_sulfate_transporter 512 628 - -
HCH1g0037 653 ProSiteProfiles STAS domain profile. 511 635 IPR002645 -
HCH1g0037 653 Pfam STAS domain 516 631 IPR002645 -
HCH1g0037 653 FunFam Sulfate transporter 31 491 638 - -
HCH1g0037 653 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
HCH1g0037 653 Gene3D STAS domain 491 637 IPR036513 -
HCH1g0037 653 NCBIfam sulfate permease 67 628 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0037 653 Pfam Sulfate permease family 80 460 IPR011547 GO:0016020(InterPro)
HCH1g0037 653 SUPERFAMILY SpoIIaa-like 517 635 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0037 HCH-Chr1:2625862 HCH4g1677 HCH-Chr4:18000567 6.70E-205 dispersed
HCH1g0037 HCH-Chr1:2625862 HCH4g1371 HCH-Chr4:10035240 1.30E-237 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0037 K17471 - csv:101219163 1065.45