Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0050 ATGGCCGGTGCCGGTGTTGTCGCCGGCGGTGATTGCGACAGTACTCCGGCGTTAATTTTACTTGGGTTTGTGAACGATGTTGTTCGATTTTCCAACACTGAAGGAGTTGAGCTTTTCAAAAAGGATTGCACCGATCTGGTCCGTCGGATCGTGCTTTTGACACATTTGTTTGAAGAAATCAGAGATTACTTTAATAGTATCAAGTTTAAACAAGTCAATTCTTCATCTTCTTCTTTGCCGTCTTCTTCTTCTACTAGCTGTTCTACTCTTTCCGATTTGATTTCCGCTTTAAAGGATACTAAACGCCTCGTTTTCGTCGCTTCTACCTTTCGTCCTTCCAACTCTTCTGACGGATTTGCCAAAAAGATACTATTCCAGTTCCAATGTGTAACGTGGAAATTAGAGAAAGCATTGGGAAGTCTTCCTTATGATCACTTTGATATATCAGAGGAAGTTCAGGAGCAGGTTCAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGATAAATATGGGTCTTTGACGGCAATTCCATTGTCAGTTGTTCAGTCTCAGATGCTGAAGAAAAATGTAGATCCGTTAAATCTGAACAACTGGGCAGATAACATTGATGCTGAGGAAAATGGTAGTATTGATCATGAAATTACAGTGAAATTTGATGCTTTTCAAGACTGTAGAGGTTTGATGAGTCATGGTGTGGATCAGCTGATTTCAGAAGGACCTAGAAAATTCCCATCCTCATCAGAGACTTGTTCTGATGGGGAGGACGACTCCACCAGCAAGAGCGGAGACAAGGTTAAGAACCCTGATGGAATTGTAATACCTGATGATTTTTTATGCCCCATTTCACTGGAAATTATGAGGGACCCTGTTATTGTGTCCACGGGCCAGACATATGAGAGATCTTACATTCAGAGGTGGATAGATTGTGGGAACACTTCTTGTCCTAAAACTCAGCAGAAGCTTGAAAATTTGACTCTCACACCAAATTATGTTTTGCGAAGTCTTATTAGTCAATGGTGTGTGAAGCACAATTTTGAGCAACCGACAGGCTTAACCAATGGGAAAATAAAAAAGTGTGATGGATCATATCGTGATGTTTGTGGAGAGATGACAGCCATTGAAACTTTGGTCCGCAAGCTATCTAGCCATTCAATTGAGGAGCAGAGAGCTTCTGTGACAGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCAGAAGCAGGAGCAATTCCTGCATTGGTCAACCTGCTAACTGCTGATGATATTTTAACACAAGAAAATGCGGTTACTTCCATTCTCAACCTCTCTATATATGAGAATAACAAGGGACTAATTATGCTTGCTGGTGCAATACCTTCTATTGTCCAAGTTTTGAGAGTTGGAAGCATGGAAGCGAGAGAAAATGCAGCAGCAACACTCTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATTATTGGTGCTTCTGGGGCCATTCCGGCTCTGGTGGATTTACTCGAAAATGGAAGCTCGAGAGGGAAGAAGGATGCTGCAACAGCGCTATTTAATTTGTGTATTTACCAGGGAAACAAGGGTAGGGCTGTGAGGGCAGGGATAATCACAGCTCTACTGAGTATGCTTACAGATTCAAGCAATTCCATGGTTGATGAAGCTCTTACTATAATGTCAGTTCTTGCAAGCCATCAAGAAGCAAAGGTAGCCATGGTGAAGGCTAGTACCATACCCGTCTTAATAGACCTTATGAGGACTGGATTGGCTCGCAACAAAGAAAATGCTGCTGCTATTTTACTTGCTTTGTGTAAGAGAGACAGTGACAATCTTGCTTGTATAAGCAGGCTCGGTGCTGTGATTCCGTTAACAGAGCTTGCGAAAAGTGGCACAGAGAGAGCAAAAAGAAAGGCTACCTCACTGCTGGAGCATCTTCGAAAACTACAGCAGCTATAA 1959 42.11 MAGAGVVAGGDCDSTPALILLGFVNDVVRFSNTEGVELFKKDCTDLVRRIVLLTHLFEEIRDYFNSIKFKQVNSSSSSLPSSSSTSCSTLSDLISALKDTKRLVFVASTFRPSNSSDGFAKKILFQFQCVTWKLEKALGSLPYDHFDISEEVQEQVQLVRAQLRRAADKYGSLTAIPLSVVQSQMLKKNVDPLNLNNWADNIDAEENGSIDHEITVKFDAFQDCRGLMSHGVDQLISEGPRKFPSSSETCSDGEDDSTSKSGDKVKNPDGIVIPDDFLCPISLEIMRDPVIVSTGQTYERSYIQRWIDCGNTSCPKTQQKLENLTLTPNYVLRSLISQWCVKHNFEQPTGLTNGKIKKCDGSYRDVCGEMTAIETLVRKLSSHSIEEQRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTADDILTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIITALLSMLTDSSNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLMRTGLARNKENAAAILLALCKRDSDNLACISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4626756 4629730 + evm.model.ptg000006l.1238 HCH1g0050 538069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 552 651 - -
HCH1g0050 652 CDD RING-Ubox_PUB 274 326 IPR045210 -
HCH1g0050 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 450 550 - -
HCH1g0050 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 347 IPR013083 -
HCH1g0050 652 Coils Coil 149 169 - -
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 270 346 - -
HCH1g0050 652 SUPERFAMILY RING/U-box 272 346 - -
HCH1g0050 652 PANTHER U BOX DOMAIN-CONTAINING 39 648 - -
HCH1g0050 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART Ubox_2 276 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0050 652 SUPERFAMILY ARM repeat 363 646 IPR016024 -
HCH1g0050 652 Coils Coil 632 652 - -
HCH1g0050 652 Gene3D - 352 651 IPR011989 -
HCH1g0050 652 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0050 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 356 449 - -
HCH1g0050 652 Pfam Armadillo/beta-catenin-like repeat 485 523 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 Pfam Armadillo/beta-catenin-like repeat 402 441 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 MobiDBLite consensus disorder prediction 237 268 - -
HCH1g0050 652 Pfam U-box domain 273 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0050 652 SMART arm_5 402 442 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 566 606 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 608 648 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 443 483 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 525 565 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 484 524 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0050 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0050 HCH-Chr1:4626756 HCH2g1094 HCH-Chr2:53820840 1.20E-65 dispersed
HCH1g0050 HCH-Chr1:4626756 HCH10g1311 HCH-Chr10:45652178 3.20E-114 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40