Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0050 ATGGCCGGTGCCGGTGTTGTCGCCGGCGGTGATTGCGACAGTACTCCGGCGTTAATTTTACTTGGGTTTGTGAACGATGTTGTTCGATTTTCCAACACTGAAGGAGTTGAGCTTTTCAAAAAGGATTGCACCGATCTGGTCCGTCGGATCGTGCTTTTGACACATTTGTTTGAAGAAATCAGAGATTACTTTAATAGTATCAAGTTTAAACAAGTCAATTCTTCATCTTCTTCTTTGCCGTCTTCTTCTTCTACTAGCTGTTCTACTCTTTCCGATTTGATTTCCGCTTTAAAGGATACTAAACGCCTCGTTTTCGTCGCTTCTACCTTTCGTCCTTCCAACTCTTCTGACGGATTTGCCAAAAAGATACTATTCCAGTTCCAATGTGTAACGTGGAAATTAGAGAAAGCATTGGGAAGTCTTCCTTATGATCACTTTGATATATCAGAGGAAGTTCAGGAGCAGGTTCAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGATAAATATGGGTCTTTGACGGCAATTCCATTGTCAGTTGTTCAGTCTCAGATGCTGAAGAAAAATGTAGATCCGTTAAATCTGAACAACTGGGCAGATAACATTGATGCTGAGGAAAATGGTAGTATTGATCATGAAATTACAGTGAAATTTGATGCTTTTCAAGACTGTAGAGGTTTGATGAGTCATGGTGTGGATCAGCTGATTTCAGAAGGACCTAGAAAATTCCCATCCTCATCAGAGACTTGTTCTGATGGGGAGGACGACTCCACCAGCAAGAGCGGAGACAAGGTTAAGAACCCTGATGGAATTGTAATACCTGATGATTTTTTATGCCCCATTTCACTGGAAATTATGAGGGACCCTGTTATTGTGTCCACGGGCCAGACATATGAGAGATCTTACATTCAGAGGTGGATAGATTGTGGGAACACTTCTTGTCCTAAAACTCAGCAGAAGCTTGAAAATTTGACTCTCACACCAAATTATGTTTTGCGAAGTCTTATTAGTCAATGGTGTGTGAAGCACAATTTTGAGCAACCGACAGGCTTAACCAATGGGAAAATAAAAAAGTGTGATGGATCATATCGTGATGTTTGTGGAGAGATGACAGCCATTGAAACTTTGGTCCGCAAGCTATCTAGCCATTCAATTGAGGAGCAGAGAGCTTCTGTGACAGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCAGAAGCAGGAGCAATTCCTGCATTGGTCAACCTGCTAACTGCTGATGATATTTTAACACAAGAAAATGCGGTTACTTCCATTCTCAACCTCTCTATATATGAGAATAACAAGGGACTAATTATGCTTGCTGGTGCAATACCTTCTATTGTCCAAGTTTTGAGAGTTGGAAGCATGGAAGCGAGAGAAAATGCAGCAGCAACACTCTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATTATTGGTGCTTCTGGGGCCATTCCGGCTCTGGTGGATTTACTCGAAAATGGAAGCTCGAGAGGGAAGAAGGATGCTGCAACAGCGCTATTTAATTTGTGTATTTACCAGGGAAACAAGGGTAGGGCTGTGAGGGCAGGGATAATCACAGCTCTACTGAGTATGCTTACAGATTCAAGCAATTCCATGGTTGATGAAGCTCTTACTATAATGTCAGTTCTTGCAAGCCATCAAGAAGCAAAGGTAGCCATGGTGAAGGCTAGTACCATACCCGTCTTAATAGACCTTATGAGGACTGGATTGGCTCGCAACAAAGAAAATGCTGCTGCTATTTTACTTGCTTTGTGTAAGAGAGACAGTGACAATCTTGCTTGTATAAGCAGGCTCGGTGCTGTGATTCCGTTAACAGAGCTTGCGAAAAGTGGCACAGAGAGAGCAAAAAGAAAGGCTACCTCACTGCTGGAGCATCTTCGAAAACTACAGCAGCTATAA 1959 42.11 MAGAGVVAGGDCDSTPALILLGFVNDVVRFSNTEGVELFKKDCTDLVRRIVLLTHLFEEIRDYFNSIKFKQVNSSSSSLPSSSSTSCSTLSDLISALKDTKRLVFVASTFRPSNSSDGFAKKILFQFQCVTWKLEKALGSLPYDHFDISEEVQEQVQLVRAQLRRAADKYGSLTAIPLSVVQSQMLKKNVDPLNLNNWADNIDAEENGSIDHEITVKFDAFQDCRGLMSHGVDQLISEGPRKFPSSSETCSDGEDDSTSKSGDKVKNPDGIVIPDDFLCPISLEIMRDPVIVSTGQTYERSYIQRWIDCGNTSCPKTQQKLENLTLTPNYVLRSLISQWCVKHNFEQPTGLTNGKIKKCDGSYRDVCGEMTAIETLVRKLSSHSIEEQRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTADDILTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIITALLSMLTDSSNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLMRTGLARNKENAAAILLALCKRDSDNLACISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4626756 4629730 + evm.model.ptg000006l.1238 HCH1g0050 538069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 552 651 - -
HCH1g0050 652 CDD RING-Ubox_PUB 274 326 IPR045210 -
HCH1g0050 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 450 550 - -
HCH1g0050 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 347 IPR013083 -
HCH1g0050 652 Coils Coil 149 169 - -
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 270 346 - -
HCH1g0050 652 SUPERFAMILY RING/U-box 272 346 - -
HCH1g0050 652 PANTHER U BOX DOMAIN-CONTAINING 39 648 - -
HCH1g0050 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART Ubox_2 276 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0050 652 SUPERFAMILY ARM repeat 363 646 IPR016024 -
HCH1g0050 652 Coils Coil 632 652 - -
HCH1g0050 652 Gene3D - 352 651 IPR011989 -
HCH1g0050 652 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0050 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 FunFam RING-type E3 ubiquitin transferase 356 449 - -
HCH1g0050 652 Pfam Armadillo/beta-catenin-like repeat 485 523 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 Pfam Armadillo/beta-catenin-like repeat 402 441 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 MobiDBLite consensus disorder prediction 237 268 - -
HCH1g0050 652 Pfam U-box domain 273 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0050 652 SMART arm_5 402 442 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 566 606 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 608 648 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 443 483 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 525 565 IPR000225 GO:0005515(InterPro)
HCH1g0050 652 SMART arm_5 484 524 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0050 HCH-Chr1:4626756 HCH2g1094 HCH-Chr2:53820840 1.20E-65 dispersed
HCH1g0050 HCH-Chr1:4626756 HCH10g1311 HCH-Chr10:45652178 3.20E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0050 - - - 0.0