Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0075 ATGAAGATGCAGCAGAGCCACTGTTTGGTGGCTGTGAGGTTGAATGAGCAAATGGGAACCAAGAAAGGATTTACATTCATTCAGGCTAATAGAGCCTGGCTTCCTAAGTTTCTTTTGCTTTGGGTTTTATTTGTTGCATTTTTTAGCATGTCTATTTACAAGGGAATGGATGATGATAATAAAGTTAGAAGAAAGGAAGTTTTAGGTAGTATGTGTGACCAAAGGGCAAGGATGCTTCAAGATCAATTCAGTGTTAGTGTCAACCATGTTCATGCCTTGGCTATTCTAATTTCCACTTTCCATTACTTCAAGAATATATCCGCAATCGATCAGGAAACTTTTGCTGAATACACTGCTAGAACTGCTTTTGAGAGACCTTTACTTAGTGGGGTGGCCTATGCTCAAAGGGTGGTGAATTCAGAGCGAGAGAAATTCGAGAAGCAACATGGATGGACTATAAAAACAATGGAAAAAGAACCGTCGCCCATCCGTGATGAGTATGCTCCAGTTATATTTTCACAGGAAACCGTTTCTTACATTGAATCTCTTGATATGATGTCTGGGGAGGAGGACCGAGAAAACATTTTGAGGTCAAGAGCAACAGGGAAGGCTGTTTTAACGAGTCCTTTCAGGCTACTGAGTTCTCACCATCTTGGAGTTGTGTTGACAATCCCTGTTTATAAAACCAAACTTCCTGCAAATCCAACAGTGGAAGAGCGAATTCGAGCAACGGCTGGATACCTTGGTGGAGCCTTTGATGTGGAATCACTAGTTGAAAATTTACTTGGGCAACTTGCTGGAAATCAGGCGATTTTGGTGAATGTGTATGATATCACAAACTACTCTGATCCCCTTATAATGTATGGTCATCAATATCAAGATGGTGATACATCTCTTTTGCACGAAAGCAAATTTGATTTTGGAGATCCATTCAGGAAGCATCAAATGATATGCAGATATCACCAGAAAGCACCAACATTATGGACCGCGCTTACTACTGCATTCTTATTCTTTGTGATTGGATTGTTAGTAGGCTATATCTTATACGGTGCAGCAACTCATATTGTCAAAGTTGAGGATGATTTCCATGAAATGCAAGAATTGAAAGTTCGAGCAGAAGCTGCCGATGTTGCAAAATCTGAGTTTCTAGCTACTGTCTCCCATGAAATTAGGACACCCATGAATGGCATTCTAGGAATGCTTGCTCTACTTCTTCATACGGAATTAAGTTCGACTCAAAGGGATTATGCTCAAACCGCTCAGGCCTGTGGTAAAGCACTGATAGCCTTAATAAATGAGGTGCTTGACAGGGCAAAGATTGAAGCTGGAAAACTGGAGCTTGAAGCAGTGCCTTTTGACCTCAGATTGATACTAGATGATGTTTTGTCTTTATTTTCTGAAAAGTCAAGGAACAAGGGTATAGAGTTGGCAGTATTTGTTTCTGACAAAGTTCCTGAAATTATTATGGGTGATCCTGGAAGATTCAGACAAGTAATCACAAATCTTGTGGGTAATTCTGTAAAATTCACAGAGCGAGGACATATATTTGTGAAAGTTCAATTAGCTGAACAATCAATGGCCTCTACCAATATAAAATCTGAAACTCATGTGAACGGAAACTTAGATGATGGTGCATTATACAATAAATGTCAGTTTGAAACCTTAAGTGGATTTGAGGCAGCCGATAACCAGAATAGTTGGGATACCTTTAAGCATCTCATTGCTTACGAGGAGTTCCAATCCAATACTGCAAATAATTTAACTGTCACCAATGATGTTACTGTAATGATATCTGTGGAGGACACAGGAATTGGGATTCCGTTAAGTGCACAAGGGCGAGTTTTCATGCCCTTCATGCAAGCAGATAGTTCAACCTCTAGAAATTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAATGTCTGGTTGAATTGATGGGTGGTCAAATAAACTTTGTAAGCCGCCCTCAGGTGGGAAGCACATTCTCATTCACTGCCAATTTTGGAAAATGTGACAAAAAACCAACTGTTGATATTAAAAAATCTAATTTGGAAGAACTTCCATCTGTTCATAGAGGATTGAAAGCTGTGGTTGTGGATGGAAAACCAGTTAGAGCTGCTGTGACCAAATACCACTTGAAGAGACTTGGCATCCTCGTTGAAGTTGCCAGTAGTGTCAAGATGGCAGCAGCTTTATGGGGGAAAAACGGTTCTGTTAGATCCGGTAACATAATCCAGCCTGATGTAATTCTTCTTGAGAAAGATTCAGTTATTACAAATGAGGAATGTGGTTCTAGTTTACTTCATCAACTAGAATGGAAACAGAATGGCCATACGTTCAAGTTTCCAAAACTGATCCTTCTCGCGACCAATATAAAAGCTCCTGAATTTGATAAAGCAAAGGAAGCAGGCTTTTCAGACACGGTGATCATGAAACCATTGAGGGCAAGCATGATAGGTGCATGTCTTCAACAAGTACTGGGTACAGGAAAAAAACGAGAGCACGGGAAGGACATGGTTAAGGGCTCTTCTTTTCTTCAGGGTCTGCTCTGTGGCAAGAAAATACTAGTTGTTGATGACAATATGGTAAACCGAAGAGTTGCTGCAGGTGCTTTGAAGAAGTTTGGAGCTGACGTGGAGTGTGCCGAAAGTGGCAAAGCTGCACTGGCATTGCTTCAACTACCACACGGTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGGTTTGAAGCGACCCGAAGAATCAGGCTGATGGAAAGGAAGGAAAATGAGCTTCCGCGAAGGGAGTCCGCTGCCAAAGAATATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCCATGACAGCTGACGTAATTCATGCGACATACGAGGAGTGCCAGAAATGCGGGATGGATGGATATGTTTCGAAGCCATTCGAAGAAGAGAATCTTTATCAGGCAGTTGCCAAGTTTTTCAAATGA 2976 41.03 MKMQQSHCLVAVRLNEQMGTKKGFTFIQANRAWLPKFLLLWVLFVAFFSMSIYKGMDDDNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYFKNISAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREKFEKQHGWTIKTMEKEPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRATGKAVLTSPFRLLSSHHLGVVLTIPVYKTKLPANPTVEERIRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNYSDPLIMYGHQYQDGDTSLLHESKFDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSEFLATVSHEIRTPMNGILGMLALLLHTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRNKGIELAVFVSDKVPEIIMGDPGRFRQVITNLVGNSVKFTERGHIFVKVQLAEQSMASTNIKSETHVNGNLDDGALYNKCQFETLSGFEAADNQNSWDTFKHLIAYEEFQSNTANNLTVTNDVTVMISVEDTGIGIPLSAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTANFGKCDKKPTVDIKKSNLEELPSVHRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSGNIIQPDVILLEKDSVITNEECGSSLLHQLEWKQNGHTFKFPKLILLATNIKAPEFDKAKEAGFSDTVIMKPLRASMIGACLQQVLGTGKKREHGKDMVKGSSFLQGLLCGKKILVVDDNMVNRRVAAGALKKFGADVECAESGKAALALLQLPHGFDACFMDIQMPEMDGFEATRRIRLMERKENELPRRESAAKEYARKDEWHVPILAMTADVIHATYEECQKCGMDGYVSKPFEEENLYQAVAKFFK 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6270979 6282042 + evm.model.ptg000006l.1213 HCH1g0075 538094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0075 991 SUPERFAMILY CheY-like 692 828 IPR011006 -
HCH1g0075 991 Gene3D - 351 441 - -
HCH1g0075 991 Pfam Response regulator receiver domain 855 922 IPR001789 GO:0000160(InterPro)
HCH1g0075 991 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 990 IPR050956 -
HCH1g0075 991 ProSiteProfiles CHASE domain profile. 105 317 IPR006189 -
HCH1g0075 991 SMART HisKA_10 378 443 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH1g0075 991 FunFam Histidine kinase 4 109 324 - -
HCH1g0075 991 Pfam CHASE domain 108 288 IPR006189 -
HCH1g0075 991 CDD REC_hyHK_CKI1_RcsC-like 855 986 - -
HCH1g0075 991 CDD HATPase_EvgS-ArcB-TorS-like 495 668 - -
HCH1g0075 991 SMART CHASE_2 105 290 IPR006189 -
HCH1g0075 991 FunFam Histidine kinase 3 848 991 - -
HCH1g0075 991 SUPERFAMILY CheY-like 852 989 IPR011006 -
HCH1g0075 991 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH1g0075 991 PRINTS Bacterial sensor protein C-terminal signature 654 667 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH1g0075 991 PRINTS Bacterial sensor protein C-terminal signature 595 609 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH1g0075 991 PRINTS Bacterial sensor protein C-terminal signature 613 623 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH1g0075 991 CDD HisKA 378 439 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH1g0075 991 SMART REC_2 853 986 IPR001789 GO:0000160(InterPro)
HCH1g0075 991 FunFam Histidine kinase 4 350 441 - -
HCH1g0075 991 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 587 666 IPR003594 -
HCH1g0075 991 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 432 665 IPR036890 -
HCH1g0075 991 Gene3D CHASE domain 109 324 IPR042240 -
HCH1g0075 991 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 364 444 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH1g0075 991 Coils Coil 428 448 - -
HCH1g0075 991 Gene3D - 56 108 - -
HCH1g0075 991 ProSiteProfiles Response regulatory domain profile. 854 990 IPR001789 GO:0000160(InterPro)
HCH1g0075 991 Gene3D - 849 991 - -
HCH1g0075 991 Gene3D - 690 832 - -
HCH1g0075 991 ProSiteProfiles Histidine kinase domain profile. 385 670 IPR005467 -
HCH1g0075 991 ProSiteProfiles Response regulatory domain profile. 695 827 IPR001789 GO:0000160(InterPro)
HCH1g0075 991 Gene3D - 442 673 IPR036890 -
HCH1g0075 991 SMART HKATPase_4 490 670 IPR003594 -
HCH1g0075 991 Pfam His Kinase A (phospho-acceptor) domain 378 443 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1380 HCH-Chr10:46349571 HCH1g0075 HCH-Chr1:6270979 0.00E+00 dispersed
HCH12g0444 HCH-Chr12:2574668 HCH1g0075 HCH-Chr1:6270979 2.90E-42 dispersed
HCH1g0075 HCH-Chr1:6270979 HCH2g0666 HCH-Chr2:50453017 6.70E-273 dispersed
HCH1g0075 HCH-Chr1:6270979 HCH7g0328 HCH-Chr7:2343186 1.00E-281 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33025 PF03924 CHASE 1.70E-36 CL0165 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0075 K14489 - csv:101204531 1730.69