Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0081 GCCAAAAAAATGTCTGGTTTGAAAGAAGTTGGAAGGAAGAAGAGGAAGAGAGGAGAGAAGGTTTTTAGGTTTAAAAGCTTTGGTGAAAATGGATATCCAACTGAGTTTTTGGGTCCATTTAGAGAGAATGTAAAAACACTTCTTGAATTTGGGCATTGGGAGAGTAATTTTTGTAGTGGATTTCAAAGCTGGTCTTTTCAGCTTGAAGTTCATCGTCATCCTCCTTTCCACATTCTGCTCTTGGTTGTTGAAGAACCTGTTGAGGCCTCCCCCATTAAAAACTGTAAACACTGCCACTACGTTGGCTGGGGCAACCATATGATTTGCAATAAGAAGTATCACTTTTTGTTGCCCTCTAAGGACACCATGATGGCTGCTTGCTCCAACTGCAAAACAAACTCTAATGGGGTGGTTTTGGCAAACAACAATATTGCAACAAAGCCCTTCAGCTTTGTGGAATTACAAGGTCATATTCTTCATGGTGTTTTTCATTCCAATGGATTCGGTCATTTACTGTGTGTTAACGGACTCGAAACGGGTTCGGATCTACCCGGATACCTTGTCATGGAGTTTTGGGATCGTTTGTGCAATGTGTTAAGGGCAAGGAAAGTAAGTTTGAGCGACATTTCACAAAAGAGAGGAATGGAACTAAGGCTAATCCATGGAGCTGCATATAGCCAGCCATGGTTTGGTCGCTGGGATTACAAATTTCGCCGTGGAACCTTCTGTGTTACCTATCAAATGTACCAAAAAGCTCTTGAAGCCATTCAAGCAACTCCACTCTCTTTGCTTCTTCACCATCTCAGCTCCTCCAACCATGAACTTCCCTTAATTTTCTCAAAATATCAATCTCTCTCCGACCACTCTTTAGTCAACCTCGGCGACCTTTTCCATTTCATGCTCGAGCTCAAATCCCGTCTTCACACACAAACTTCATTGGATTCCCATAACCTCTCCGGTTTCTTGCTAGAAACTTCATGTCGATGGTCTCCGAAGAGAGTCGAAATGGCAGTTCGTGTCATTATCGAAGCTTTGAAGAGAGCTGAATTCCGGTGGGTTTCACGGCAGGAAGTTAGGGATGCAGCTCGTATGTACATCGGCGACACCGGGCTGTTGGATTTCGTGTTGAAATCGTTAGGCAACCATGTTGTGGGAAATTACTTAGTTCGTCGGACGTTGAATCCGGTAACGAAAGTGCTCGAGTATTGTTTACAAGACGTCTGCAAT 1227 43.44 AKKMSGLKEVGRKKRKRGEKVFRFKSFGENGYPTEFLGPFRENVKTLLEFGHWESNFCSGFQSWSFQLEVHRHPPFHILLLVVEEPVEASPIKNCKHCHYVGWGNHMICNKKYHFLLPSKDTMMAACSNCKTNSNGVVLANNNIATKPFSFVELQGHILHGVFHSNGFGHLLCVNGLETGSDLPGYLVMEFWDRLCNVLRARKVSLSDISQKRGMELRLIHGAAYSQPWFGRWDYKFRRGTFCVTYQMYQKALEAIQATPLSLLLHHLSSSNHELPLIFSKYQSLSDHSLVNLGDLFHFMLELKSRLHTQTSLDSHNLSGFLLETSCRWSPKRVEMAVRVIIEALKRAEFRWVSRQEVRDAARMYIGDTGLLDFVLKSLGNHVVGNYLVRRTLNPVTKVLEYCLQDVCN 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6712966 6716721 - evm.model.ptg000006l.1207 HCH1g0081 538100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0081 409 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0081 K26271 - - mdm:103411908 573.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0081 HCH-Chr1:6712966 HCH1g0232 HCH-Chr1:37685183 2.00E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0209 . 21 830 PHD Transcription Factor Family AT3G53680 53.5 8.6e-245 843.6
HCH9g0644 . 381 509 PHD Transcription Factor Family AT3G53680 53.5 2.8e-38 157.5
HCH2g1111 . 319 445 PHD Transcription Factor Family AT3G53680 54.7 1.4e-37 155.2
HCH1g0472 . 433 559 PHD Transcription Factor Family AT3G53680 55.9 1.8e-37 154.8
HCH1g0081 . 13 409 PHD Transcription Factor Family AT5G22260 60.7 6.4e-134 474.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009705 1 1 1 0 1 2 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 33