Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0105 ATGGAAGTTATGGTTTTAAGGTACTTTTCATTCTTGTTCATCTTCTTGGTTTTTATTCTGGGTCAAGTTGAAGGTAATGATGCAGAAGCTCTTTTGGCATTGAAATCATCTCTGGACCCACAAAACTCTCTCCCATGGCGGCGAGGAAGTTCCTTCTGCAAATGGAAAGGGGTAAGAGAATGCACAAATGGGAGAGTAACTAAACTCGTTTTAGAGCATTTGAATCTCACTGGTGTTCTTAATCACAACATTTTAAGCCGTTTAAATCAGCTTCGTGTTCTTAGCTTCAAAGGCAATTCACTTTCCGGGCAAATCCCTGATCTCTCCTCCCTCATTAATCTCAAATCTCTTTATCTCAGCAACAACAACTTCTCCGGCGAGTTGCCCACTTCTATTTCTGATCTCCATCGTTTAAAAGTCGTCGTTTTATCCGGTAATCGAATCTCCGGTCCTATACCGGATTCCTTACTTAAACTCCGTCGTCTCTATGTTCTACATTTGCAGGACAATCGTCTCACTGGCATTATACCTTCTTTTAACCAAACCAGCCTCCGTTTCTTCAATGTATCTAATAACCTTCTCTCCGGGGAGATCCCGGAGACTCCGGTGTTAATCCGGTTCAACGCGTCATCGTTTTCGGGTAACTTGAAACTATGTGGGAAGCAAATTCAGTTTCCATGTGAGAATATTGCAATGCCTCCCTCATTGAGTCCATCTTATCCGTTAATTCCAGTGTCGAAATTGAATTCGAAACACAGGAAATTAGTGAAGATTGTAGCGGGGAGTATAGGTGGATTAGTTGGACTATTGATCTGCTTTGTATTAGTATGTGTGATATGTAAATGTGGAGAAAGGAAGAGTTTGGTAGAGGTTAGAAATAAAGGAATTGGAGATGAAGAAATGGAAATAGCAGAAGCATCAGGAACTGGTGGTGGTAATGGTGGCGGCAGGGGAGGTAATAATGGAGGAAGACCAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGGAGTTTAGTGTTCTGTGGAGCAGGGGATCAGAAAATGACATATAGTTTAGAAGATTTATTGAAAGCATCAGCAGAGACATTAGGGAGAGGAACAATAGGTAGCACGTACAAGGCGGTGATGGAATCAGGGTTTATAGTGACAGTGAAGAGGTTAAAGGAAGCAAGGTATCCAAGAGCAGAGGAATTTGGAAGGCAAATGGAGGTTCTTGGGAGATTGAGGCATACTAATTTGGTACCACTTAGGGCTTATTTTCAAGCCAAGGAGGAACGTTTGCTTGTTTATGATTATTTCCCTAATGGCAGTCTTTTCTCTCTCATTCACGGATCAAGAACTTCAGGGGGTGGAAAGCCTCTTCATTGGACATCCTGCCTCAAAATAGCTGAAGACTTGGCAAATGGTCTGCTGTATATCCACCAGAACCCCGGCTTAACCCATGGGAACTTGAAATCCTCGAACGTACTATTGGGATCCGATTTTGAGTCGTGCCTGACAGATTACGGTCTCAATTTATTCCGTGATCCGGATTCACATGAAGAAACGAGTGCAACTTCACTGTTTTATAGAGCTCCTGAATGTCGTGACATCCGTAAGCCATCGACACAAGAAGCCGATGTCTACAGCTTTGGAGTTCTTCTGTTGGAGCTTTTAACAGGAAAAACACCTTTCCAAGATCTAGTCCAAGAACATGGTTCTGATATTCCCAAGTGGGTTAATTCAGTAAGGGAAGAAGAGACAGAGTCAGGGGACGACCCTGCGTCCGGAAACGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTAAACATTGCAATGGCATGTGTTTCACTTGTGTCAGAAAACAGACCAACAATGAGGGAGGTTCTAAAGATGATAAGAGATACAAGAGCAGAAGCCCAAATATCATCAAACAGTAGTGATCATTCACCAGGAAGATGGTCAGATATTGTTCAGAGTTTGCCGAGAGAAGAACATTTGAGCATTTGA 1989 42.74 MEVMVLRYFSFLFIFLVFILGQVEGNDAEALLALKSSLDPQNSLPWRRGSSFCKWKGVRECTNGRVTKLVLEHLNLTGVLNHNILSRLNQLRVLSFKGNSLSGQIPDLSSLINLKSLYLSNNNFSGELPTSISDLHRLKVVVLSGNRISGPIPDSLLKLRRLYVLHLQDNRLTGIIPSFNQTSLRFFNVSNNLLSGEIPETPVLIRFNASSFSGNLKLCGKQIQFPCENIAMPPSLSPSYPLIPVSKLNSKHRKLVKIVAGSIGGLVGLLICFVLVCVICKCGERKSLVEVRNKGIGDEEMEIAEASGTGGGNGGGRGGNNGGRPGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGFIVTVKRLKEARYPRAEEFGRQMEVLGRLRHTNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSHEETSATSLFYRAPECRDIRKPSTQEADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVNSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVSENRPTMREVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHLSI 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8230422 8234771 - evm.model.ptg000006l.1183 HCH1g0105 538124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0105 662 Gene3D Transferase(Phosphotransferase) domain 1 433 648 - -
HCH1g0105 662 SUPERFAMILY L domain-like 27 221 - -
HCH1g0105 662 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515(InterPro)
HCH1g0105 662 Pfam Leucine Rich Repeat 183 201 IPR001611 GO:0005515(InterPro)
HCH1g0105 662 MobiDBLite consensus disorder prediction 572 593 - -
HCH1g0105 662 MobiDBLite consensus disorder prediction 305 326 - -
HCH1g0105 662 Gene3D Phosphorylase Kinase; domain 1 340 432 - -
HCH1g0105 662 FunFam Nuclear pore complex protein NUP107 24 178 - -
HCH1g0105 662 SUPERFAMILY Protein kinase-like (PK-like) 361 635 IPR011009 -
HCH1g0105 662 Pfam Protein kinase domain 360 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0105 662 MobiDBLite consensus disorder prediction 633 647 - -
HCH1g0105 662 MobiDBLite consensus disorder prediction 633 662 - -
HCH1g0105 662 Gene3D Ribonuclease Inhibitor 181 230 IPR032675 -
HCH1g0105 662 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
HCH1g0105 662 Pfam Leucine rich repeat N-terminal domain 26 58 IPR013210 -
HCH1g0105 662 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0105 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 634 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0302 HCH-Chr14:31658011 HCH1g0105 HCH-Chr1:8230422 4.90E-104 dispersed
HCH1g0105 HCH-Chr1:8230422 HCH3g0220 HCH-Chr3:1405698 1.70E-78 dispersed
HCH1g0105 HCH-Chr1:8230422 HCH4g0623 HCH-Chr4:4077127 4.00E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81263 PF00069 Pkinase 1.10E-35 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0105 - - - 0.0