Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0107 | ATGGGGTTTCAGAATTTCTTCTTGATTTCCATTTTCATGGCTCTCTCTTTCCAACCCCATCTCATGAGTTCCCAGAATCTCATATGCCATTCTGACGATCTTAAAGCTTTGAATGAATTGCACATCGGTTTTAAATCAAAACTTGATGCTTGGGGCACCAATTATTCGATGAATTGCTGCAATTGGATTGGTGTTATTTGTAATTCTTCATCCTCTCTGGGGTTAAATGAATCAAACAATTCTAGTAGAGTTGTTATGTTGGAGCTTTCAAGGAGGAAGTTAATGGGAAAATTATCAGATTCTATTGGAACATTGGAACATCTTAGGTTTCTCAATATCTCTAACAATTTCCTTTCAGACTTGCTTCCATTATCTTTGTTTCAATTGCCAAACTTGGAGGTTCTTGATCTTAGCTCTAATGATTTCTTCGGTGGTATTCCAAAAAACATAAATCTACCATCCATTCAATTCCTTGATGTTTCTAAGAATTCTTTACAAGGTTTTCTTTCACTTGGTTTTTGTCTCAATTCCTCTAGAATTGAAAATCTGAATTTGGGTTACAACTTTTTCTCTGGTAAGTTTCCTGCCGAATTTGATAACTGTAGTTCATTAAAGCAACTTAATTTGGAAATGAATTTGATCAATGGAGAGATACCTGATGAAGTATTTGGATTGCAAAAATTGACCCATTTGAACATTCAATATAACAAGCTATCGGGTTTGCTGAATGGTCTTATCGGTAACCTCACAAACCTCGTTTCGTTGGATATATCATCCAATATGTTTTTTGGAGAAATTCCTGATGTTTTTTACAAATGTGGAAAATTGAGGCACTTTCTTGCTCACTCTAATGGCTTTAGTGGGAACATTCCCACTTCCTTGTCGAGTTCTGGGTCACTCGCGATCCTGAATTTGAGGAACAATTCAATGGAGGGAACACTTGATCTTAATTGTCCAGCAATGACAAGCTTAGTCTCACTTGATTTGGGTACTAATCGATTTCGTGGTCCCATGCCCAGTAATCTTCCCTCTTGTAGGTATTTAAGAAGTATAAATCTCGCACGGAACAAATTCAGAGGCCAAATCCCAGAAAGCTTTAGAACTTTCCCAAGCCTTTCGTATCTATCACTTACAAATACCAACATTCTTAATATTTCGTCCGCCTTTGATATTTTGCAGCATTGCCAGAATCTGAGCACTATGGTTCTCACTTTTAACTTCCATGGTGAAGAGTTGCCAGCTGATCTTAACTTGCATTTCAAAAGCCTCAAGGTTTTAATAGTTGCTAATTGTGGATTGAAGGGAATGATTCCCCAGTGGTTGAGACGTTCTACCGAATTGCAGTTCCTTGATTTGTCATGGAACCATCTTGGAGGAACCATTTCATCCTGGGTTGGCGAGTTTCAGTTTCTTTTTTACTTGGATTTATCAAATAATACACTTACTGGAGAGATCCCGAAAGAGATAACTGGATTGCGGAATCTCGTCAGCAGAAATATCTCATTGGAGGACCCTTCCTCCCCAGATTTTGCATTTTATTTAAAAAGAAATGGATCTGGATTGCAGTACAATCAAGTAGGGAGATTTCCACCCACTCTGAACCTCAGTGATAACCGTCTCAGTGGGCCAATCTGGCCAGAGTTTGGAAATCTTAAAAGGGTCCAAGTTTTGGATCTGAAATTCAACAATTTGTCTGGACCGATTCCCAGTAGCCTATCTGAGATGATCAGTTTAGAGATTCTGGATTTGTCACATAACAATCTATCAGGAACAATTCCACATTCACTGCAAAAACTTAGCTTTTTATCTAAGTTCAGTGTTGCAGGCAATCACTTACATGGGGCAATTCCTAAAGGAGGTCAGTTTCAAACATTTCCCAACTCTAGCTTTGAAGGGAATGATTTTTGCGGCAACCATGACCATTGTACATCAATTGACCAAAATCCTCTTGTACCACCCCCCAAATTAAGAAGAGCTAAAGGGGTTCTTATTGGTATGATCGTCGGTATCGTGTTTGGAATCGTTTTTCTTGTAACACTCATGGTTATGATCGTTCTTCTGATGCATAGAGGAAGAGTGGGAGATCCTGAAAGAGAACTATTCGACACCAATAATAAGGACTTGGAGGAAGCCAAGTCTGGATTGGTAATTTTGTTCCCAAACGATGGGAACAGCGGAGGCCTCTCGCTTGATGACATTTTGCAATCAACTAATGACTTTGATCAAGCAAATATCATTGGATGTGGTGGTTTTGGTTTAGTGTTTAAAGCCACACTCCCTGGTGGTAGAAAGGTAGCTATCAAACGGCTGTCTGGTGGTTGTGGTCAAATGGAAAGAGAATTCCAAGCAGAAGTTGAAACACTCTCAAGTGCTCAGCATCCGAATCTCGTTCTTCTTGAGGGGTATTGCATATATAAAAATGACAGGCTTTTGATATATTCTTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAAACTGATGGCCCATCTTCCCTTGACTGGGATACAAGACTGCAGATTGCTCAGGGAGCTGCAAGGGGGCTTGCTTATTTGCATCAATCCTGTGAACCCCATATTCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGATGAAAATTTTGAAGCTCATTTAGCCGACTTTGGTCTTGCTAGGCTCATACTTCCCTATGATACCCATGTAACTACCGATCTTGTTGGTACACTAGGCTACATTCCACCTGAGTATGGGCAATCCTCAGTAGCTACTTACAAAGGGGATGTGTACAGTTTCGGAGTCGTTCTTTTAGAACTTCTGACCGGTAAAAGGCCAATCGATATATGCAGACCAAAAGGATTCCGAGATTTGATCTCTTGGGTATTTCAAATGAAGAAAGACAGAAGAGAGAGTGAAGTTTTCGATCCTTTTATTTACGACAAGCTGCGGGACATGGAGTTGATTCGAGTTCTTGAGATAGCATGCCTTTGCCTAAGTGACGTACCTAAAGAGAGACCTTCAACTCAACAGATAGTCTCTTGGCTTGATAAAATAATTTAA | 3048 | 39.47 | MGFQNFFLISIFMALSFQPHLMSSQNLICHSDDLKALNELHIGFKSKLDAWGTNYSMNCCNWIGVICNSSSSLGLNESNNSSRVVMLELSRRKLMGKLSDSIGTLEHLRFLNISNNFLSDLLPLSLFQLPNLEVLDLSSNDFFGGIPKNINLPSIQFLDVSKNSLQGFLSLGFCLNSSRIENLNLGYNFFSGKFPAEFDNCSSLKQLNLEMNLINGEIPDEVFGLQKLTHLNIQYNKLSGLLNGLIGNLTNLVSLDISSNMFFGEIPDVFYKCGKLRHFLAHSNGFSGNIPTSLSSSGSLAILNLRNNSMEGTLDLNCPAMTSLVSLDLGTNRFRGPMPSNLPSCRYLRSINLARNKFRGQIPESFRTFPSLSYLSLTNTNILNISSAFDILQHCQNLSTMVLTFNFHGEELPADLNLHFKSLKVLIVANCGLKGMIPQWLRRSTELQFLDLSWNHLGGTISSWVGEFQFLFYLDLSNNTLTGEIPKEITGLRNLVSRNISLEDPSSPDFAFYLKRNGSGLQYNQVGRFPPTLNLSDNRLSGPIWPEFGNLKRVQVLDLKFNNLSGPIPSSLSEMISLEILDLSHNNLSGTIPHSLQKLSFLSKFSVAGNHLHGAIPKGGQFQTFPNSSFEGNDFCGNHDHCTSIDQNPLVPPPKLRRAKGVLIGMIVGIVFGIVFLVTLMVMIVLLMHRGRVGDPERELFDTNNKDLEEAKSGLVILFPNDGNSGGLSLDDILQSTNDFDQANIIGCGGFGLVFKATLPGGRKVAIKRLSGGCGQMEREFQAEVETLSSAQHPNLVLLEGYCIYKNDRLLIYSYMENGSLDYWLHEKTDGPSSLDWDTRLQIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDENFEAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDICRPKGFRDLISWVFQMKKDRRESEVFDPFIYDKLRDMELIRVLEIACLCLSDVPKERPSTQQIVSWLDKII | 1015 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8283826 | 8286873 | + | evm.model.ptg000006l.1181 | HCH1g0107 | 538126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0107 | 1015 | ProSiteProfiles | Leucine-rich repeat profile. | 577 | 600 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Protein kinase domain | 742 | 1008 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0107 | 1015 | SUPERFAMILY | L domain-like | 52 | 241 | - | - | |
HCH1g0107 | 1015 | Pfam | Leucine rich repeat N-terminal domain | 30 | 68 | IPR013210 | - | |
HCH1g0107 | 1015 | PRINTS | Leucine-rich repeat signature | 575 | 588 | - | - | |
HCH1g0107 | 1015 | PRINTS | Leucine-rich repeat signature | 471 | 484 | - | - | |
HCH1g0107 | 1015 | ProSiteProfiles | Leucine-rich repeat profile. | 107 | 128 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | SUPERFAMILY | L domain-like | 437 | 641 | - | - | |
HCH1g0107 | 1015 | SUPERFAMILY | L domain-like | 176 | 502 | - | - | |
HCH1g0107 | 1015 | SMART | LRR_typ_2 | 575 | 603 | IPR003591 | - | |
HCH1g0107 | 1015 | SMART | LRR_typ_2 | 129 | 153 | IPR003591 | - | |
HCH1g0107 | 1015 | SMART | LRR_typ_2 | 105 | 128 | IPR003591 | - | |
HCH1g0107 | 1015 | SMART | LRR_typ_2 | 225 | 248 | IPR003591 | - | |
HCH1g0107 | 1015 | SMART | LRR_typ_2 | 321 | 345 | IPR003591 | - | |
HCH1g0107 | 1015 | SMART | LRR_typ_2 | 249 | 272 | IPR003591 | - | |
HCH1g0107 | 1015 | Gene3D | Transferase(Phosphotransferase) domain 1 | 816 | 1014 | - | - | |
HCH1g0107 | 1015 | Gene3D | Phosphorylase Kinase; domain 1 | 704 | 815 | - | - | |
HCH1g0107 | 1015 | ProSiteProfiles | Protein kinase domain profile. | 740 | 1015 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0107 | 1015 | Gene3D | Ribonuclease Inhibitor | 321 | 647 | IPR032675 | - | |
HCH1g0107 | 1015 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 221 | 314 | - | - | |
HCH1g0107 | 1015 | Gene3D | Ribonuclease Inhibitor | 30 | 319 | IPR032675 | - | |
HCH1g0107 | 1015 | SUPERFAMILY | Protein kinase-like (PK-like) | 727 | 1011 | IPR011009 | - | |
HCH1g0107 | 1015 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 862 | 874 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine rich repeat | 553 | 612 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | FunFam | Leucine-rich repeat receptor-like protein kinase | 816 | 1015 | - | - | |
HCH1g0107 | 1015 | SMART | serkin_6 | 740 | 1011 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0107 | 1015 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 275 | 1013 | IPR051420 | - | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 447 | 466 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 131 | 150 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 348 | 368 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 107 | 129 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 471 | 492 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 532 | 551 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 251 | 273 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | Pfam | Leucine Rich Repeat | 227 | 249 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0107 | 1015 | ProSitePatterns | Protein kinases ATP-binding region signature. | 746 | 768 | IPR017441 | GO:0005524(InterPro) | |
HCH1g0107 | 1015 | FunFam | Tyrosine-sulfated glycopeptide receptor 1 | 318 | 647 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0183 | HCH-Chr14:27506950 | HCH1g0107 | HCH-Chr1:8283826 | 3.60E-71 | dispersed | |
HCH1g0107 | HCH-Chr1:8283826 | HCH4g1243 | HCH-Chr4:8488622 | 1.00E-135 | dispersed | |
HCH1g0107 | HCH-Chr1:8283826 | HCH6g0671 | HCH-Chr6:39742926 | 3.40E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81264 | PF00069 | Pkinase | 8.40E-42 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0107 | K27625 | - | csv:116404121 | 1330.85 |