Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0107 ATGGGGTTTCAGAATTTCTTCTTGATTTCCATTTTCATGGCTCTCTCTTTCCAACCCCATCTCATGAGTTCCCAGAATCTCATATGCCATTCTGACGATCTTAAAGCTTTGAATGAATTGCACATCGGTTTTAAATCAAAACTTGATGCTTGGGGCACCAATTATTCGATGAATTGCTGCAATTGGATTGGTGTTATTTGTAATTCTTCATCCTCTCTGGGGTTAAATGAATCAAACAATTCTAGTAGAGTTGTTATGTTGGAGCTTTCAAGGAGGAAGTTAATGGGAAAATTATCAGATTCTATTGGAACATTGGAACATCTTAGGTTTCTCAATATCTCTAACAATTTCCTTTCAGACTTGCTTCCATTATCTTTGTTTCAATTGCCAAACTTGGAGGTTCTTGATCTTAGCTCTAATGATTTCTTCGGTGGTATTCCAAAAAACATAAATCTACCATCCATTCAATTCCTTGATGTTTCTAAGAATTCTTTACAAGGTTTTCTTTCACTTGGTTTTTGTCTCAATTCCTCTAGAATTGAAAATCTGAATTTGGGTTACAACTTTTTCTCTGGTAAGTTTCCTGCCGAATTTGATAACTGTAGTTCATTAAAGCAACTTAATTTGGAAATGAATTTGATCAATGGAGAGATACCTGATGAAGTATTTGGATTGCAAAAATTGACCCATTTGAACATTCAATATAACAAGCTATCGGGTTTGCTGAATGGTCTTATCGGTAACCTCACAAACCTCGTTTCGTTGGATATATCATCCAATATGTTTTTTGGAGAAATTCCTGATGTTTTTTACAAATGTGGAAAATTGAGGCACTTTCTTGCTCACTCTAATGGCTTTAGTGGGAACATTCCCACTTCCTTGTCGAGTTCTGGGTCACTCGCGATCCTGAATTTGAGGAACAATTCAATGGAGGGAACACTTGATCTTAATTGTCCAGCAATGACAAGCTTAGTCTCACTTGATTTGGGTACTAATCGATTTCGTGGTCCCATGCCCAGTAATCTTCCCTCTTGTAGGTATTTAAGAAGTATAAATCTCGCACGGAACAAATTCAGAGGCCAAATCCCAGAAAGCTTTAGAACTTTCCCAAGCCTTTCGTATCTATCACTTACAAATACCAACATTCTTAATATTTCGTCCGCCTTTGATATTTTGCAGCATTGCCAGAATCTGAGCACTATGGTTCTCACTTTTAACTTCCATGGTGAAGAGTTGCCAGCTGATCTTAACTTGCATTTCAAAAGCCTCAAGGTTTTAATAGTTGCTAATTGTGGATTGAAGGGAATGATTCCCCAGTGGTTGAGACGTTCTACCGAATTGCAGTTCCTTGATTTGTCATGGAACCATCTTGGAGGAACCATTTCATCCTGGGTTGGCGAGTTTCAGTTTCTTTTTTACTTGGATTTATCAAATAATACACTTACTGGAGAGATCCCGAAAGAGATAACTGGATTGCGGAATCTCGTCAGCAGAAATATCTCATTGGAGGACCCTTCCTCCCCAGATTTTGCATTTTATTTAAAAAGAAATGGATCTGGATTGCAGTACAATCAAGTAGGGAGATTTCCACCCACTCTGAACCTCAGTGATAACCGTCTCAGTGGGCCAATCTGGCCAGAGTTTGGAAATCTTAAAAGGGTCCAAGTTTTGGATCTGAAATTCAACAATTTGTCTGGACCGATTCCCAGTAGCCTATCTGAGATGATCAGTTTAGAGATTCTGGATTTGTCACATAACAATCTATCAGGAACAATTCCACATTCACTGCAAAAACTTAGCTTTTTATCTAAGTTCAGTGTTGCAGGCAATCACTTACATGGGGCAATTCCTAAAGGAGGTCAGTTTCAAACATTTCCCAACTCTAGCTTTGAAGGGAATGATTTTTGCGGCAACCATGACCATTGTACATCAATTGACCAAAATCCTCTTGTACCACCCCCCAAATTAAGAAGAGCTAAAGGGGTTCTTATTGGTATGATCGTCGGTATCGTGTTTGGAATCGTTTTTCTTGTAACACTCATGGTTATGATCGTTCTTCTGATGCATAGAGGAAGAGTGGGAGATCCTGAAAGAGAACTATTCGACACCAATAATAAGGACTTGGAGGAAGCCAAGTCTGGATTGGTAATTTTGTTCCCAAACGATGGGAACAGCGGAGGCCTCTCGCTTGATGACATTTTGCAATCAACTAATGACTTTGATCAAGCAAATATCATTGGATGTGGTGGTTTTGGTTTAGTGTTTAAAGCCACACTCCCTGGTGGTAGAAAGGTAGCTATCAAACGGCTGTCTGGTGGTTGTGGTCAAATGGAAAGAGAATTCCAAGCAGAAGTTGAAACACTCTCAAGTGCTCAGCATCCGAATCTCGTTCTTCTTGAGGGGTATTGCATATATAAAAATGACAGGCTTTTGATATATTCTTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAAACTGATGGCCCATCTTCCCTTGACTGGGATACAAGACTGCAGATTGCTCAGGGAGCTGCAAGGGGGCTTGCTTATTTGCATCAATCCTGTGAACCCCATATTCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGATGAAAATTTTGAAGCTCATTTAGCCGACTTTGGTCTTGCTAGGCTCATACTTCCCTATGATACCCATGTAACTACCGATCTTGTTGGTACACTAGGCTACATTCCACCTGAGTATGGGCAATCCTCAGTAGCTACTTACAAAGGGGATGTGTACAGTTTCGGAGTCGTTCTTTTAGAACTTCTGACCGGTAAAAGGCCAATCGATATATGCAGACCAAAAGGATTCCGAGATTTGATCTCTTGGGTATTTCAAATGAAGAAAGACAGAAGAGAGAGTGAAGTTTTCGATCCTTTTATTTACGACAAGCTGCGGGACATGGAGTTGATTCGAGTTCTTGAGATAGCATGCCTTTGCCTAAGTGACGTACCTAAAGAGAGACCTTCAACTCAACAGATAGTCTCTTGGCTTGATAAAATAATTTAA 3048 39.47 MGFQNFFLISIFMALSFQPHLMSSQNLICHSDDLKALNELHIGFKSKLDAWGTNYSMNCCNWIGVICNSSSSLGLNESNNSSRVVMLELSRRKLMGKLSDSIGTLEHLRFLNISNNFLSDLLPLSLFQLPNLEVLDLSSNDFFGGIPKNINLPSIQFLDVSKNSLQGFLSLGFCLNSSRIENLNLGYNFFSGKFPAEFDNCSSLKQLNLEMNLINGEIPDEVFGLQKLTHLNIQYNKLSGLLNGLIGNLTNLVSLDISSNMFFGEIPDVFYKCGKLRHFLAHSNGFSGNIPTSLSSSGSLAILNLRNNSMEGTLDLNCPAMTSLVSLDLGTNRFRGPMPSNLPSCRYLRSINLARNKFRGQIPESFRTFPSLSYLSLTNTNILNISSAFDILQHCQNLSTMVLTFNFHGEELPADLNLHFKSLKVLIVANCGLKGMIPQWLRRSTELQFLDLSWNHLGGTISSWVGEFQFLFYLDLSNNTLTGEIPKEITGLRNLVSRNISLEDPSSPDFAFYLKRNGSGLQYNQVGRFPPTLNLSDNRLSGPIWPEFGNLKRVQVLDLKFNNLSGPIPSSLSEMISLEILDLSHNNLSGTIPHSLQKLSFLSKFSVAGNHLHGAIPKGGQFQTFPNSSFEGNDFCGNHDHCTSIDQNPLVPPPKLRRAKGVLIGMIVGIVFGIVFLVTLMVMIVLLMHRGRVGDPERELFDTNNKDLEEAKSGLVILFPNDGNSGGLSLDDILQSTNDFDQANIIGCGGFGLVFKATLPGGRKVAIKRLSGGCGQMEREFQAEVETLSSAQHPNLVLLEGYCIYKNDRLLIYSYMENGSLDYWLHEKTDGPSSLDWDTRLQIAQGAARGLAYLHQSCEPHILHRDIKSSNILLDENFEAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDICRPKGFRDLISWVFQMKKDRRESEVFDPFIYDKLRDMELIRVLEIACLCLSDVPKERPSTQQIVSWLDKII 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8283826 8286873 + evm.model.ptg000006l.1181 HCH1g0107 538126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0107 1015 ProSiteProfiles Leucine-rich repeat profile. 577 600 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Protein kinase domain 742 1008 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0107 1015 SUPERFAMILY L domain-like 52 241 - -
HCH1g0107 1015 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
HCH1g0107 1015 PRINTS Leucine-rich repeat signature 575 588 - -
HCH1g0107 1015 PRINTS Leucine-rich repeat signature 471 484 - -
HCH1g0107 1015 ProSiteProfiles Leucine-rich repeat profile. 107 128 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 SUPERFAMILY L domain-like 437 641 - -
HCH1g0107 1015 SUPERFAMILY L domain-like 176 502 - -
HCH1g0107 1015 SMART LRR_typ_2 575 603 IPR003591 -
HCH1g0107 1015 SMART LRR_typ_2 129 153 IPR003591 -
HCH1g0107 1015 SMART LRR_typ_2 105 128 IPR003591 -
HCH1g0107 1015 SMART LRR_typ_2 225 248 IPR003591 -
HCH1g0107 1015 SMART LRR_typ_2 321 345 IPR003591 -
HCH1g0107 1015 SMART LRR_typ_2 249 272 IPR003591 -
HCH1g0107 1015 Gene3D Transferase(Phosphotransferase) domain 1 816 1014 - -
HCH1g0107 1015 Gene3D Phosphorylase Kinase; domain 1 704 815 - -
HCH1g0107 1015 ProSiteProfiles Protein kinase domain profile. 740 1015 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0107 1015 Gene3D Ribonuclease Inhibitor 321 647 IPR032675 -
HCH1g0107 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 221 314 - -
HCH1g0107 1015 Gene3D Ribonuclease Inhibitor 30 319 IPR032675 -
HCH1g0107 1015 SUPERFAMILY Protein kinase-like (PK-like) 727 1011 IPR011009 -
HCH1g0107 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0107 1015 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 FunFam Leucine-rich repeat receptor-like protein kinase 816 1015 - -
HCH1g0107 1015 SMART serkin_6 740 1011 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0107 1015 PANTHER LEUCINE RICH REPEAT KINASE 2 275 1013 IPR051420 -
HCH1g0107 1015 Pfam Leucine Rich Repeat 447 466 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Leucine Rich Repeat 131 150 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Leucine Rich Repeat 348 368 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Leucine Rich Repeat 471 492 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Leucine Rich Repeat 532 551 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Leucine Rich Repeat 251 273 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515(InterPro)
HCH1g0107 1015 ProSitePatterns Protein kinases ATP-binding region signature. 746 768 IPR017441 GO:0005524(InterPro)
HCH1g0107 1015 FunFam Tyrosine-sulfated glycopeptide receptor 1 318 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0183 HCH-Chr14:27506950 HCH1g0107 HCH-Chr1:8283826 3.60E-71 dispersed
HCH1g0107 HCH-Chr1:8283826 HCH4g1243 HCH-Chr4:8488622 1.00E-135 dispersed
HCH1g0107 HCH-Chr1:8283826 HCH6g0671 HCH-Chr6:39742926 3.40E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81264 PF00069 Pkinase 8.40E-42 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0107 K27625 - csv:116404121 1330.85