Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0118 ATGCCAGCAACAAGGCTATTCCTCTCTCTCTTCCTACTCTTATCTCTCTCCTCCCATCTCTCCGCCGTAGCTACCCATCACCGGCGCCACCACCACCGTCATCTCCTCCACCAACCCTTCTTTCCATGGAACACTTTCCCTCCAACACAACCACCATCTCCTCAACCACAACCTCAACAACAACAACCTAAACTCCCATTCTCTTCCACTCCATATCCCACACCACCAAAACCCTTTTTTCCTTCCTACACCTCCTCCCCATCGCCGCCACCGCCACTGCCGCCGTCCACAGCACTTCCGACATTCCCAGCTAACATATCCGCCCTTCTCTTCCCTCAAACCCCTTCAAAACCCCACCACCATATCTTCCCCATTATCATTTCCCTCTCTCTCATTTCCTCTATTCTTCTCTTTCTCTTTATCATTTTCTTTTATTTTAGAAAAACCCATCACAGCTACACCTCTGGTGGTAATGATAAAGCTTCTGGAACTGATAATCTAAGATTATATCCACCTGATATTGACACTTCTGATGGTGTCAACAAGAACAGGACAACTGAGAATCCTGCTTCCTCTAAGTTTCTTTACCTCGGTACTTTGTCGGATCCACTACATGTCGATGAGGAAGTTGTCGGCAATGTCGTCGTCGGAGACGACGTATCGTCGTCACCGGTGAAGATAGGGTCACCGGAGCTGAAACCACTTCCTCCACTTTCAAGGTATTACTTAGGAAAAGATTATAGGAAGTCTGTGGAAATTGATAGTGAAAATGTTGATGTTGATGTTGATGATGATGAAGAGTTTTTTTCTCCTAGAGGATCTTCTGGTGAAAAAGAGAGTTTTAAGAGATTGAGCTTTAGGAAATTGGAAAACTTTGATAGAAAAAGCTTTCATTTGAATTCTAATTCTGCTTCTCCAACTTTTTCTATGCCAAATAGTCCTTCCCCACCATTGATTTTGAGTCCCACCAGCTTCAAGTCCAAATCACCCGACTCCATTATCCGATTCCCGTTCCCGTTACGACCATTGCCGTCGCGCCCTGTGCCGTTGTCGTCTCCGTCGTTATCTTCAACATCTTCACCGCAGAGGGATTCTGATCAGCAGGAGTTGAAACGCCAATTCTCAAACGGATTCAAGGCTGATTCTCAGCAGCCAACGCCGGTGAAGCTTACACCACCACCACCTCCACCAATGCCGCCACCGATGTTGTGGGAGATCCCTACTTCTTCTGCTCTCACTAAAGAGCCAGATTTAGGTCCACCGGTCCTTGCTGTGCCTTCGAGACCGATATTGCCTCAGAATCTTGCTCATGTTTCACCAAGTGAGCAATCAGGCAATGGTGTTGAAAGGAATGAGGAAAATGCAAAGCCGAAATTGAAGCCCTTACATTGGGATAAAGTTCGAACAAGCTCCAATCGAGCTATGGTGTGGGATCATATCAAGTCAAGTTCTTTTCAGTTAAATGAGGAAATGATCGAATCACTTTTTATGGTAAATAATTCAAATATGACAACCAAAGATAATGTTGGTCTACGTCAGAATCTGCCATTACTAAACCAAGAGAATCGTGTTCTTGATCCAAAGAAGTCCCAGAATATTGCAATTTTGTTGAGAGCATTAAATGTCACCATTGAAGAAGTCTCTGATGCCCTTTTGGAAGGGAATTCGGATACTTTGGGTACAGAACTTCTTGAAAGTTTATTGAAAATGGCGCCAACGAAAGAAGAAGAACGTAATTTGAAAGAGTTCAAAGATGAATCGCCTTTTAAACTAGGCCCGGCTGAGAAATTTCTCAAGGTACTGCTTGATGTACCTTTTGCATTTAAGAGGGTGGATGCAATGCTTTACATTGCCAATTTCGATTCTGAAACCGAGTACCTTGGAAGGTCATTTGAAACTCTGGAGGCTGCTTGTAAAGAATTGAAAAACAGCAAAATGTTCCTCAAACTTCTTGAAGCAGTGCTCAAAACTGGGAACCGCATGAATGTTGGCACTAACCGGGGCGACGCTCATGCCTTTAAACTTGACACCCTTCTCAAGCTTGTTGATGTCAAGGGTGCTGATGGGAAAACCACTCTCTTGCATTTTGTAGTTCAGGAAATTATTAGAGCTGAAGGTTACCGACATTCTGCCTCCAATCAGAACCTGACAGCTGATAAACCCCAGCAATCTTCTTTCACAAATGATGTCGAGTTTAGAAAGCTCGGGCTGCAAATTGTTTCGGGTCTAAGCAGGGAGCTTTCCAGTGTAAAAAAGGTTGCCGTAATGGATGCAGATGTGATTAGCAATGATGTTGCAAAACTTGCTGGAGGAATTGCAAAAATCACTGAGATTGTCAAGTTAAATGAAGACATGATGTTGAAAGGAAGTAGCTCAAATTTCTCAGACTCCATGAACAAATTCTTGGGGAAGGCAGCTGAAGAAATAGCAAGAATACAAGCCCGAGAGTGCACCGTTCTCGCAACAGTGAAGGAAATAACCGAATATTTCCATGGCAATTTAGCCAAGGAAGAAGCTCGACCTCTTCGTATTTTCACAGTGGTGAGGGATTTTCTTGCAATCCTGGATCAGGTATGCAAGGAGGTTGGAAGAATTAACGAAAGAACCATAGTTGGTTCGGCTCGTCAATTTACCGTGCCTCCGAACTCGAGCCTTCCATCAGTTTTCTCTGGATTTCGTGAAAGCCAGGAGTACGGTTCCTCCGACGAAGATAGCTCGTCTTCATCATCTTAG 2733 44.2 MPATRLFLSLFLLLSLSSHLSAVATHHRRHHHRHLLHQPFFPWNTFPPTQPPSPQPQPQQQQPKLPFSSTPYPTPPKPFFPSYTSSPSPPPPLPPSTALPTFPANISALLFPQTPSKPHHHIFPIIISLSLISSILLFLFIIFFYFRKTHHSYTSGGNDKASGTDNLRLYPPDIDTSDGVNKNRTTENPASSKFLYLGTLSDPLHVDEEVVGNVVVGDDVSSSPVKIGSPELKPLPPLSRYYLGKDYRKSVEIDSENVDVDVDDDEEFFSPRGSSGEKESFKRLSFRKLENFDRKSFHLNSNSASPTFSMPNSPSPPLILSPTSFKSKSPDSIIRFPFPLRPLPSRPVPLSSPSLSSTSSPQRDSDQQELKRQFSNGFKADSQQPTPVKLTPPPPPPMPPPMLWEIPTSSALTKEPDLGPPVLAVPSRPILPQNLAHVSPSEQSGNGVERNEENAKPKLKPLHWDKVRTSSNRAMVWDHIKSSSFQLNEEMIESLFMVNNSNMTTKDNVGLRQNLPLLNQENRVLDPKKSQNIAILLRALNVTIEEVSDALLEGNSDTLGTELLESLLKMAPTKEEERNLKEFKDESPFKLGPAEKFLKVLLDVPFAFKRVDAMLYIANFDSETEYLGRSFETLEAACKELKNSKMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGYRHSASNQNLTADKPQQSSFTNDVEFRKLGLQIVSGLSRELSSVKKVAVMDADVISNDVAKLAGGIAKITEIVKLNEDMMLKGSSSNFSDSMNKFLGKAAEEIARIQARECTVLATVKEITEYFHGNLAKEEARPLRIFTVVRDFLAILDQVCKEVGRINERTIVGSARQFTVPPNSSLPSVFSGFRESQEYGSSDEDSSSSSS 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8760457 8763953 - evm.model.ptg000006l.1170 HCH1g0118 538137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0118 910 MobiDBLite consensus disorder prediction 371 386 - -
HCH1g0118 910 MobiDBLite consensus disorder prediction 884 910 - -
HCH1g0118 910 MobiDBLite consensus disorder prediction 154 186 - -
HCH1g0118 910 MobiDBLite consensus disorder prediction 300 326 - -
HCH1g0118 910 MobiDBLite consensus disorder prediction 350 364 - -
HCH1g0118 910 SUPERFAMILY Formin homology 2 domain (FH2 domain) 392 868 - -
HCH1g0118 910 PANTHER FORMIN-RELATED 14 903 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH1g0118 910 Pfam Formin Homology 2 Domain 451 855 IPR015425 -
HCH1g0118 910 MobiDBLite consensus disorder prediction 47 70 - -
HCH1g0118 910 MobiDBLite consensus disorder prediction 344 403 - -
HCH1g0118 910 SMART it6_source 449 870 IPR015425 -
HCH1g0118 910 MobiDBLite consensus disorder prediction 78 97 - -
HCH1g0118 910 MobiDBLite consensus disorder prediction 387 403 - -
HCH1g0118 910 Gene3D Formin, FH2 domain 448 865 IPR042201 -
HCH1g0118 910 ProSiteProfiles Formin homology-2 (FH2) domain profile. 449 881 IPR015425 -
HCH1g0118 910 MobiDBLite consensus disorder prediction 47 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0118 HCH-Chr1:8760457 HCH5g0214 HCH-Chr5:1215988 1.70E-09 dispersed
HCH1g0118 HCH-Chr1:8760457 HCH2g0759 HCH-Chr2:51235032 1.60E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0118 K28090 - csv:101213912 980.704