Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0122 ATGACACCGTTAACTAAACTAGCTGTTGCTGCTGCTGTTTTGATGTTGCTGCTCTTGGGCACATCATGTAATGCACAGCTTTCCTCTACATTTTATGATCAAACTTGTCCAAATGCTCTCACTACAATTAGAACTGTCATTAGACAAGCCGTTTCTCAAGAACGTCGAATGGCGGCCTCTCTCATTCGCCTTCATTTTCATGACTGCTTTGTTCAGGGTTGTGATGCATCGATATTGCTCGACGACACTCCTTCTATGATCGGTGAACAAAACGCAGCGCCTAATAGAAACTCCGCAAGAGGTTATGGAGTCATACACAAAGCTAAATCTGAAGTTGAGAAGATATGTCCTGGCGTTGTATCTTGTGCTGATATTCTTACTGTGGCTGCAAGAGATGCCTCCTTTGCTGTCGGTGGTCCATCTTGGACAGTGAAGCTTGGAAGGAGAGATTCTACCACTGCAAGCAAAGCTCTAGCAGAGAGTGAGCTTCCAGGTTTCCAAGAAAGCCTCGATAGACTTATTGCCATTTTTGAAAACAAAGGTCTCACTGCAAGAGATATGGTTGCATTGTCAGGTTCTCATACCATAGGACAAGCTCAATGCTTTCTTTTCCGCAACAGGATTTACAATCAAAGTAACATCGATGCCGGATTCTCTAGCACTCGTAGGAGAAATTGTCCGACATCCGGTGGGAATGGAAACTTGGCACCACTTGATCTGGTCACACCCAATTCCTTTGACAACAACTACTTCAAAAATCTTATTCAGAGGAAGGGTTTGCTTGAAACAGACCAAGTTCTCTTTAATGGCGGATCGACGGACAATATCGTTACCGAGTATAGTAGGAATCCGGCTACATTTAAATCCGACTTTGCGAATGCAATGATTAAAATGGGAGATATCGAACCTCTCACTGGTTTAGCAGGGCAGATAAGAAACATATGTGGTGCTGTTAACTAA 960 43.44 MTPLTKLAVAAAVLMLLLLGTSCNAQLSSTFYDQTCPNALTTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKSEVEKICPGVVSCADILTVAARDASFAVGGPSWTVKLGRRDSTTASKALAESELPGFQESLDRLIAIFENKGLTARDMVALSGSHTIGQAQCFLFRNRIYNQSNIDAGFSSTRRRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLIQRKGLLETDQVLFNGGSTDNIVTEYSRNPATFKSDFANAMIKMGDIEPLTGLAGQIRNICGAVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9029518 9030763 + evm.model.ptg000006l.1166 HCH1g0122 538141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0122 319 Pfam Peroxidase 43 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 Gene3D - 30 315 - -
HCH1g0122 319 CDD secretory_peroxidase 26 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH1g0122 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
HCH1g0122 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 PANTHER PEROXIDASE 72-RELATED 15 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0122 319 FunFam Peroxidase 164 298 - -
HCH1g0122 319 FunFam Peroxidase 30 176 - -
HCH1g0122 319 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
HCH1g0122 319 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
HCH1g0122 319 Gene3D Peroxidase, domain 2 164 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0122 HCH-Chr1:9029518 HCH1g0132 HCH-Chr1:9900540 3.30E-149 dispersed
HCH1g0121 HCH-Chr1:9003441 HCH1g0122 HCH-Chr1:9029518 1.50E-47 tandem
HCH1g0122 HCH-Chr1:9029518 HCH1g0123 HCH-Chr1:9087891 6.70E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0122 K00430 - csv:116403796 552.747