Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0123 ATGGTATCAGCAGCTTCTTTAACCTTCTCCACTGTCACCAAACTGGCTACTATTTTGTTCATATTATTGGTTTTGGCCTCTACATGTAATGCTCATCTTTCTTCTACATTTTATCATAAAACTTGCCCTAATGCACTCACTACTATAAGAAAGACAGTCAGGGAAGCAGTCTCGAGGGAACGTCGAATGGCTGCATCTCTCATTCGCCTCCATTTTCATGATTGTTTTGTTAAGGGTTGTGATGCATCTATATTACTCGACGACACTCCGTCCATGATTGGTGAACAAAATGCGTTGCCTAATAAAGGCTCTGTGAGAGGATTTGGAGTAATTCATCAAGCAAAGTCTGCAGTTGAGAAGATATGTCCTGGGGTTGTATCATGTGCAGACATTCTCACTTTGGCTGCACGAGATGCTACCGTTGCTGTTGGTGGTCCTTCTTGGACGGTGAAGCTTGGAAGAAGAGATTCTATCACAGCAAGCAAAGCTTTAGCAGAGAAAGAGCTTCCGGATTTCAAAGACAGCCTCAACAAGCTTATTTCCACCTTTGATCGGAAAGGTCTTAACGCACGAGACTTGGTCGCCTTGTCAGGTTCTCATACAATAGGACAGGCTCAATGCTTCCTCTTTCGTGATAGGATATACAACGACAGTAACATCGATGCAGGCTTTGCAAGCACTCGCAGACGTCGTTGCCCGATGTCCAACACCGGAAATGCAAACTTAGCACCACTTGATTTGGTAACACCCAACTCATTCGACAACAACTATTTCAAGAATTTGATAAAAAAGAAAGGTCTTCTTGAAACCGACCAAGTTCTCTTCAATGGTGGATCCACAGACCATATTGTGTCAGATTATAGCAAAGATCCTGCCATGTTTAAATCTGATTTTGCAGCCGCCATGATCAAGATGGCAGATATTGAGCCTCTCACTGGCCCAGCCGGCCAAATCAGAAAAATTTGTGGTGCTGTGAACAAATAA 984 43.29 MVSAASLTFSTVTKLATILFILLVLASTCNAHLSSTFYHKTCPNALTTIRKTVREAVSRERRMAASLIRLHFHDCFVKGCDASILLDDTPSMIGEQNALPNKGSVRGFGVIHQAKSAVEKICPGVVSCADILTLAARDATVAVGGPSWTVKLGRRDSITASKALAEKELPDFKDSLNKLISTFDRKGLNARDLVALSGSHTIGQAQCFLFRDRIYNDSNIDAGFASTRRRRCPMSNTGNANLAPLDLVTPNSFDNNYFKNLIKKKGLLETDQVLFNGGSTDHIVSDYSKDPAMFKSDFAAAMIKMADIEPLTGPAGQIRKICGAVNK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9087891 9089505 - evm.model.ptg000006l.1165 HCH1g0123 538142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0123 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
HCH1g0123 327 Pfam Peroxidase 49 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PANTHER PEROXIDASE 72-RELATED 20 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 FunFam Peroxidase 36 199 - -
HCH1g0123 327 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 FunFam Peroxidase 170 305 - -
HCH1g0123 327 CDD secretory_peroxidase 32 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH1g0123 327 Gene3D Peroxidase, domain 2 170 305 - -
HCH1g0123 327 SUPERFAMILY Heme-dependent peroxidases 33 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0123 327 Gene3D - 36 322 - -
HCH1g0123 327 ProSiteProfiles Plant heme peroxidase family profile. 32 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0123 HCH-Chr1:9087891 HCH2g0986 HCH-Chr2:53153067 7.00E-102 dispersed
HCH1g0123 HCH-Chr1:9087891 HCH1g0132 HCH-Chr1:9900540 4.10E-134 proximal
HCH1g0122 HCH-Chr1:9029518 HCH1g0123 HCH-Chr1:9087891 6.70E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0123 K00430 - csv:116403994 488.804