Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0131 ATGGCTGCATCTTCTTCATCAGTACCACTTTTTGGAGTTAGAGAAGAAGCTGCTCAAAATCAGATGAGACAACAACAACAACAGCATTCTTCAGTTCCATCTAATTCATCCACAGTTCCTTCTTCACAACCCCAGAAGAAAAAGAGAAATCAACCAGGAACCCCAAATCCAGATGCGGAGGTGATAGCTCTAAGTCCAAAAACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGGGAACAAAATCTCCAACTTCATAGAAGAGGACATAATTTACCATGGAAGCTTAAACAAAAGACAAACAAAGAACCAAAAAGGAAGGTTTATTTATGTCCAGAGCCAACATGCGTTCATCATGATCCTTCAAGAGCTCTCGGTGATCTCACTGGTATTAAGAAACATTATTCTCGTAAACATGGCGAGAAGAAATGGAAGTGTGATAAATGCTCTAAAAGATATGCCGTTCAATCCGATTGGAAAGCTCATTCCAAGACCTGTGGTACTAGGGAATATAGATGTGACTGTGGAACTCTCTTCTCTAGACGGGACAGTTTCATCACTCACAGAGCCTTCTGCGATGCGTTGGCTCAAGAAAGTGCAAGACATCCTTCCAATTTAAGTTCCACCATTGGAAGCCATTTATATGGAAGTAATAGCAATGTTGGTTTAACCTTATCTCAAGTTCCTCAAATTTCTTCTCTTCAAGATCATTCCAACATTAACCAATCACCTCATGATATTTTGCGCCTCGGCGGTGGCAGCGGCAGAACCGGGCAGTTCAGTCATCTCCTTCCACCGTCAATGGGTTCGTCTTTTAGACCTCCGCCCCAGCCAATGCCACCGTCATCCGCTGCGGCTGCTGCCGCTTTCTTCATGACGGATCAGACTAGCCAGAATAGTTTCCATGAAGACCATCAAAGCCAATCCCAACAAGTGTTGTTCAGTAACAAAGCGTTTCATGGATTAATGCAGTTCCCTACTGATATCCAAAGCCAAACGAGTAACAATAACAATGCCAATCTCTTCAACTTGGGATTCATTGCCAATACCACCGCCGATAACAATAGCAATATGAGTAATGCTAATAATTCCAACAATGGAAGCAACAACAACAGCAACAATCTTCAATCTTCTTTGCTAAATCAGTTCAGCGGTGGTGTAAATAACGGCGGTGGCGGTGGAGGTGGTGGAGGCGAAGGTGCATCTAACATGTTCGGTGTCAACATAATGGGCGATCAAATCAGTTCAGGAGCGGTACCATCTCTCTACAGTAATGCCGGAGGCAGCGGTGGAGGTGGCGGCGGCATTCCGCATATGTCAGCAACAGCACTTCTTCAAAAGGCAGCTCAACTAGGTTCAAGTACTTCAAGCAGCAACACTACAGCCACATTGCTCCGAACCTTCGGAAGCTCTTCCTCAGGCGGCGGTGGTGGCGGTGGAGGAAAACCATCCGACAGGACGCTTTTCCCGCCAAACTATGGCGGAGTATTCGGCGAAAACGAGAACAATCTTCAAGACCTAATGAATTCATTTGCTAGCGGAGGCTCGGCAAGTAGTCTTTTCGGAGCCGGGATGAATTCATTTGGCGGATTCGACGGAAGCAACAGAAACAGTATAGAGAACATGGAGGATCCAAAGCTACAGCAAAATCTAAGCACAGTAACAATGGGAGCTGGGACAGATAGGTTAACAAGAGACTTTCTAGGAGTGGGACAAATAGTAAGGAGCATGAGCGGGGGTGGTTTTTCACAGAGATCAGATCATAAACAACCACCACAAGGGATTGTTTTGGATCCGACCGATAACAACCCCACGCCGTCAAGTCAAGCTTTCGGCGGCGGAGGGAATTATCAGTGA 1878 45.31 MAASSSSVPLFGVREEAAQNQMRQQQQQHSSVPSNSSTVPSSQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPSNLSSTIGSHLYGSNSNVGLTLSQVPQISSLQDHSNINQSPHDILRLGGGSGRTGQFSHLLPPSMGSSFRPPPQPMPPSSAAAAAAFFMTDQTSQNSFHEDHQSQSQQVLFSNKAFHGLMQFPTDIQSQTSNNNNANLFNLGFIANTTADNNSNMSNANNSNNGSNNNSNNLQSSLLNQFSGGVNNGGGGGGGGGEGASNMFGVNIMGDQISSGAVPSLYSNAGGSGGGGGGIPHMSATALLQKAAQLGSSTSSSNTTATLLRTFGSSSSGGGGGGGGKPSDRTLFPPNYGGVFGENENNLQDLMNSFASGGSASSLFGAGMNSFGGFDGSNRNSIENMEDPKLQQNLSTVTMGAGTDRLTRDFLGVGQIVRSMSGGGFSQRSDHKQPPQGIVLDPTDNNPTPSSQAFGGGGNYQ 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9617379 9620650 + evm.model.ptg000006l.1157 HCH1g0131 538150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0131 625 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
HCH1g0131 625 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
HCH1g0131 625 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 177 214 - -
HCH1g0131 625 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
HCH1g0131 625 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
HCH1g0131 625 MobiDBLite consensus disorder prediction 1 60 - -
HCH1g0131 625 MobiDBLite consensus disorder prediction 585 625 - -
HCH1g0131 625 Gene3D Classic Zinc Finger 129 209 - -
HCH1g0131 625 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 150 174 - -
HCH1g0131 625 SMART c2h2final6 116 146 IPR013087 -
HCH1g0131 625 SMART c2h2final6 75 97 IPR013087 -
HCH1g0131 625 SMART c2h2final6 151 171 IPR013087 -
HCH1g0131 625 MobiDBLite consensus disorder prediction 18 52 - -
HCH1g0131 625 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 590 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH1g0131 625 MobiDBLite consensus disorder prediction 472 501 - -
HCH1g0131 625 MobiDBLite consensus disorder prediction 362 395 - -
HCH1g0131 625 MobiDBLite consensus disorder prediction 261 291 - -
HCH1g0131 625 Pfam Zinc-finger of C2H2 type 75 97 IPR013087 -
HCH1g0131 625 FunFam protein indeterminate-domain 12-like 54 122 - -
HCH1g0131 625 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 112 146 - -
HCH1g0131 625 MobiDBLite consensus disorder prediction 362 402 - -
HCH1g0131 625 Gene3D Classic Zinc Finger 54 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0131 HCH-Chr1:9617379 HCH9g0599 HCH-Chr9:4017327 5.10E-85 dispersed
HCH1g0131 HCH-Chr1:9617379 HCH11g0273 HCH-Chr11:2485642 6.00E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33028 PF12171 zf-C2H2_jaz 3.90E-05 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0131 K25870 - csv:101219959 793.882