Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0132 ATGCCAATGCCATCACTTTTCACTTGTTTTCCTTCTGTTGTATGCATATTATTTCTTTTGAGTGCATTATGCAATGCTCAGCTTTCTTCTACATTTTATGATCAAACTTGTCCCAATGCACTCCCTGCTATCAGAAGGGTCATTCGACAAGCGGTATCTCGAGAACGTCGAATGGCTGCGTCGCTCATTCGTCTTCATTTTCACGATTGTTTTGTGCAGGGATGTGATGGTTCAATATTACTAGATGATACGGCCTCCATGGTTGGTGAACAAAATGCAGCACCTAATAGGAATTCAGCAAGAGGTTTTGAAGTCATACGTAGAGCCAAGTCTGAGATTGAGAAGATATGTCCTGGTGTTGTATCTTGTGCAGATATTCTCACTGTGGCTGCAAGAGATGCATCTTTTGCTGTGGGTGGTCCATCTTGGACAGTGAAGCTTGGAAGAAGAGATTCTACAACAGCAAGCCAGATTCTAGCAGAGAGAGAGATTCCACATTTTCAAGAGAACCTTAATAGACTTATCTCCATTTTTGCAAACAAAGGCCTCAATGCAAGAGATATGGTTGCATTATCAGGTTCCCATACTATAGGACAATCTCAATGCTCTTTCTTCCGTAATAGGATACACAATCAAAGTAATATCGACGCGGGATTTGCAAGTACTCGTAGGCGAAACTGTCCAACATCCGGTGGTGATGGAAACTTGGCTTCACTTGATTTAGTCACGCCCAATTCTTTTGACAATAACTACTTCAAGAATCTTATTCAAAGAAAGGGTTTGCTTGAAACAGACCAAGTTTTATTTAATGGAGGATCCACAGACAACATTGTTATGGATTATAGTAGAAATCCTACCATGTTTAAATCTGATTTTGCAGCTGCCATGATCAAAATGGGAGATATTGAACCTCTTACTGGTATGGAAGGGCAGATTAGAAATATTTGTAGTGCTGTAAACTAA 963 40.19 MPMPSLFTCFPSVVCILFLLSALCNAQLSSTFYDQTCPNALPAIRRVIRQAVSRERRMAASLIRLHFHDCFVQGCDGSILLDDTASMVGEQNAAPNRNSARGFEVIRRAKSEIEKICPGVVSCADILTVAARDASFAVGGPSWTVKLGRRDSTTASQILAEREIPHFQENLNRLISIFANKGLNARDMVALSGSHTIGQSQCSFFRNRIHNQSNIDAGFASTRRRNCPTSGGDGNLASLDLVTPNSFDNNYFKNLIQRKGLLETDQVLFNGGSTDNIVMDYSRNPTMFKSDFAAAMIKMGDIEPLTGMEGQIRNICSAVN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9900540 9901946 - evm.model.ptg000006l.1156 HCH1g0132 538151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0132 320 ProSiteProfiles Plant heme peroxidase family profile. 27 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 FunFam Peroxidase 165 299 - -
HCH1g0132 320 FunFam Peroxidase 31 180 - -
HCH1g0132 320 SUPERFAMILY Heme-dependent peroxidases 27 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PANTHER PEROXIDASE 72-RELATED 16 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 Gene3D Peroxidase, domain 2 165 299 - -
HCH1g0132 320 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
HCH1g0132 320 Pfam Peroxidase 44 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
HCH1g0132 320 Gene3D - 31 320 - -
HCH1g0132 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0132 320 CDD secretory_peroxidase 27 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0121 HCH-Chr1:9003441 HCH1g0132 HCH-Chr1:9900540 6.50E-35 dispersed
HCH1g0122 HCH-Chr1:9029518 HCH1g0132 HCH-Chr1:9900540 3.30E-149 dispersed
HCH1g0132 HCH-Chr1:9900540 HCH2g0985 HCH-Chr2:53144907 4.40E-101 dispersed
HCH1g0123 HCH-Chr1:9087891 HCH1g0132 HCH-Chr1:9900540 4.10E-134 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0132 K00430 - csv:116403992 512.686