Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0137 ATGGGCTGCATTTGCTCTAAAGGAGTTCCAACAAATGAGTACATTGCTGAGAATCATCATGCAAAAGAAAAACAAAAACATTTGAAGCAAAATAAATCTTCAAGACTTTTAGGTGCTTCATTGAGGAAAGAGGAAGCTGTGTTGCATTCTGATAGAGGTCAAAATGATGCAATGGTGAGATTGATAAATAATCATCAACCTGGTGAAGAGAATGTTGGATCTACACCGAAATCAGATGTCAGTGAGAAAAAGGTAGCAACTCCCATTGAGAAACCTGCAAAGCTACAGCACATATCTATGGAGGATGGTGTAAAGAAGTCACATAGTCATGCATCTAGAATAGCCAATTTTGTTAATGGAGAAACCGGGGCACAAGTTATTGCTGGATGGCCTTCTTGGCTCTCATCTGTGGCTGGTGAAGCAATCAATGGATGGGTACCTAGAAAGGCAGATTCTTTTCAGAAGTTGGACAAGATTGGACAAGGAACATACAGCAGTGTGTACAGAGCCCGTGATCTTGAATCGAACAAGATTGTTGCATTGAAGAAGGTGAGATTTGCTAACATGGACCCTGAAAGTGTTCGTTTTATGGCGAGGGAAATTCTTATCCTGCGTAGGCTTGACCACCCCAATGTAATGAAGCTTGAAGGTCTTATCACTTCAAGGGTATCTGGCAGTTTATACCTCATATTTGAGTACATGGAACATGATCTTGCTGGGTTGGCAGCAACCCCTGGGATCAAGTTCACTGAAGCACAGATAAAATGCTATATGCAACAGCTGCTTCGTGGCCTTGAATACTGCCATGCCCAGGGAGTTTTGCACCGTGACATTAAGGGCTCAAATCTTCTGATTGACAGCAATGGTAATCTTAAGATAGGTGATTTTGGGCTATCAACCTTCTTTCGTCCCCGACAAAAGCAGCCACTTACAAGTCGTGTGGTAACTTTGTGGTATCGACCACCTGAGCTTTTACTTGGTGCAACGGACTACGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGCATTCTTGCAGAATTGTTTGTAGGGAAGCCTATCATGCCCGGAAGAACTGAGGTGGAACAACTTCATAAGATTTTCAAACTTTGTGGTTCCCCTTCTGAAGAATACTGGAAGAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCCGAGACATTCAAGGACTTTCCTCCATCTGCATTGGCTCTTTTGGATATCCTTCTTGCAGTTGAACCTGATGGTCGTGGAACTGCTTCCTCTGCCCTTCACAGTGAGTTCTTCAGTACAAAACCACTTCCATCTGATCCCTCTGCTTTACCAAAGTACCCGCCTAGCAAGGAGTTTGATGCGAAGCTTCGAGATGAAGATACTAAAAGAAGAAGAGCACCTATCAACGCAACACGTGAGCATGAAACCAGAAAGTATCCCAGAGAATCTAAAGCGGTTCCTGCACCACATGCAAATGCTGAATTGCAGGCATCCATACAGAAGCAACAAGGGCAGTCTAACCCTAAAAGTATCAGTGAGAAGTATAATCCTGAAGAGGATAGTGGCTCGGGTTTCCGCATTGGGCCTCCCAAAGAAGGAACACAAATGCACCCAACTGCTGTTGGATCTTCACAATACATGAATGGGAATGAGGGTGATACGCTTAGAGGGTCAGTCAGGGCAAAAGGTGCAGAAGTTAGATCGCAAAGATCTTACTTGCATCGTGGTGCTGCACAGTTGTCTCAATTTTCCAGTTCTGTCGCAGTTCGAGGTGGTTCACGGTTTGGTGGCGGCGGAGAAAGTAGTGGTAATTCACATTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGCAGTGAATCTTCGGAAAAGCATGAATGGTCTCACCATTTATTGGACAGGCCAAAGTCTTCATATAAGAAAGATGAAAACTCAAATGGAAAAGAATTTTCTATGAGTTATGCTCCAAAGAAGAGAATTCACTATTCAGGCCCATTGATGCCTCCTGGGGGAAACATTGAGGAAATGCTCAAAGAGCACGAGAAACAAATCCGGCATGCTGTCCGGAAATCGCGTGTGGACAAAGCTAAGATAAAAAAGACCTATGATGATAAAAGACAAACTGAATCATTGCTTCACCATGGGAGAAATGGCAGTTGA 2187 43.39 MGCICSKGVPTNEYIAENHHAKEKQKHLKQNKSSRLLGASLRKEEAVLHSDRGQNDAMVRLINNHQPGEENVGSTPKSDVSEKKVATPIEKPAKLQHISMEDGVKKSHSHASRIANFVNGETGAQVIAGWPSWLSSVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDLESNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLAATPGIKFTEAQIKCYMQQLLRGLEYCHAQGVLHRDIKGSNLLIDSNGNLKIGDFGLSTFFRPRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELFVGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPPSALALLDILLAVEPDGRGTASSALHSEFFSTKPLPSDPSALPKYPPSKEFDAKLRDEDTKRRRAPINATREHETRKYPRESKAVPAPHANAELQASIQKQQGQSNPKSISEKYNPEEDSGSGFRIGPPKEGTQMHPTAVGSSQYMNGNEGDTLRGSVRAKGAEVRSQRSYLHRGAAQLSQFSSSVAVRGGSRFGGGGESSGNSHWPEECFNVSYNHFNGSESSEKHEWSHHLLDRPKSSYKKDENSNGKEFSMSYAPKKRIHYSGPLMPPGGNIEEMLKEHEKQIRHAVRKSRVDKAKIKKTYDDKRQTESLLHHGRNGS 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10363276 10375479 + evm.model.ptg000006l.1151 HCH1g0137 538156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0137 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0137 728 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524(InterPro)
HCH1g0137 728 MobiDBLite consensus disorder prediction 543 558 - -
HCH1g0137 728 PANTHER CELL DIVISION PROTEIN KINASE 152 437 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH1g0137 728 MobiDBLite consensus disorder prediction 689 728 - -
HCH1g0137 728 Gene3D Phosphorylase Kinase; domain 1 140 235 - -
HCH1g0137 728 SMART serkin_6 153 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0137 728 FunFam probable serine/threonine-protein kinase At1g54610 140 235 - -
HCH1g0137 728 MobiDBLite consensus disorder prediction 501 518 - -
HCH1g0137 728 ProSiteProfiles Protein kinase domain profile. 153 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0137 728 MobiDBLite consensus disorder prediction 437 562 - -
HCH1g0137 728 Pfam Protein kinase domain 153 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0137 728 SUPERFAMILY Protein kinase-like (PK-like) 147 444 IPR011009 -
HCH1g0137 728 MobiDBLite consensus disorder prediction 456 490 - -
HCH1g0137 728 FunFam probable serine/threonine-protein kinase At1g54610 236 477 - -
HCH1g0137 728 Gene3D Transferase(Phosphotransferase) domain 1 236 476 - -
HCH1g0137 728 CDD STKc_CDK9_like 153 437 - -
HCH1g0137 728 MobiDBLite consensus disorder prediction 705 721 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1568 HCH-Chr12:42284330 HCH1g0137 HCH-Chr1:10363276 6.50E-200 dispersed
HCH1g0137 HCH-Chr1:10363276 HCH7g1131 HCH-Chr7:44079946 4.70E-175 dispersed
HCH1g0137 HCH-Chr1:10363276 HCH6g0679 HCH-Chr6:39966838 1.20E-199 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81265 PF00069 Pkinase 3.40E-68 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0137 - - - 0.0