Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0138 ATGGCACTGGTATTGCACGGCCACACTGGAAAGGCAAACAAAAATATTTTCAAGACTCTCATTGCTGCAGAGTACAATGGAGTCCAGGTTGATCGAATTCCGAATTTTGAGATTGGTGTCTCAAACAAAACTCCAGAATTTATCAAAATGAATCCTATTGGGAAGGTTCCTGTTCTACAAACTCCTGATGGCTCCATATTTGAGAGTAATGCAATTGCGCGTTATGTTGCGCGCTTGAAGATTGATAGTCCTCTGTATGGTTCTTCTCTTATAGATTATTGGATTGATTTTGCAACATTGGAGATAGATTCTAATCTTCTGAATTGGTTTAGGCCTAGGATCGGGCGAGCTGCTTATCTTCCTCCTGTAAGAAGCTTGAGAGCTCTGGGTGCTTTGAATACACACCTTGCTTCGAACACATACCTGGTTGGTCATTCTGTGACACTGGCTGATATCATCCTGACTTGCAATCTGCACTTGGGTTTTACTTGGCTCTTGACCAAGAGCTTTACCTATGAGTTCCCACATGTTGAGAGATACTTCTGGACCTTGGTCAATCAACCAAACTTTAGAAAAATTATGGGGGAGGTGAAGCAGGCAGATTCAGTTCCACCTGTTCAATCCGCTAAGAAACTCGAGGAACCTGCTAAGCAGGTGAAGGAGGAATCAAAAAAAGAAGCTGAGAAAGAGAAGCCAAAAGCTGAAGTTGGTGGAGGAGAGGATGAGGCACCAAAGCCCAAACCCAAAAATCCCCTTGATTTGCTGCCACCGAGTAAGATGATTCTGGATGAATGGAAGCGGCTATACTCGAACACCAAAACCAACTTTCGAGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACGATGATGAGAATACTGTTTCCTTTGTGACACTCAACAAGGTTGGTGGATTTCTTCAGCGTATGGATCTGGCTCGTAAGTACGCTTTTGGGAAGATGTTAGTGATTGGATCAGAGCCTCCATTTAAAGTGAAGGGGTTGTGGATTTTTCGTGGTCAAGCGATACCACAACTTATCCTGGATGAGTGCTATGACATGGAGCTTTACGAGTGGACAAAGGTTGACATTTCCGACGATGCCCAGAAGGAACGCGTGAACCAGATGATTGAAGATCAAGAGCCTTTTGAAGGGGAGGCTCTGTTGGATGCCAAATGCTTCAAGTGA 1227 43.85 MALVLHGHTGKANKNIFKTLIAAEYNGVQVDRIPNFEIGVSNKTPEFIKMNPIGKVPVLQTPDGSIFESNAIARYVARLKIDSPLYGSSLIDYWIDFATLEIDSNLLNWFRPRIGRAAYLPPVRSLRALGALNTHLASNTYLVGHSVTLADIILTCNLHLGFTWLLTKSFTYEFPHVERYFWTLVNQPNFRKIMGEVKQADSVPPVQSAKKLEEPAKQVKEESKKEAEKEKPKAEVGGGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYDDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWIFRGQAIPQLILDECYDMELYEWTKVDISDDAQKERVNQMIEDQEPFEGEALLDAKCFK 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10461383 10464529 + evm.model.ptg000006l.1150 HCH1g0138 538157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0138 408 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
HCH1g0138 408 CDD GST_C_EF1Bgamma_like 88 201 - -
HCH1g0138 408 FunFam Elongation factor 1B gamma 1 76 - -
HCH1g0138 408 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 84 206 IPR010987 -
HCH1g0138 408 SUPERFAMILY eEF1-gamma domain 248 408 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH1g0138 408 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 248 408 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH1g0138 408 Gene3D - 82 208 - -
HCH1g0138 408 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 248 408 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH1g0138 408 Pfam Elongation factor 1 gamma, conserved domain 247 354 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH1g0138 408 SUPERFAMILY GST C-terminal domain-like 84 204 IPR036282 -
HCH1g0138 408 MobiDBLite consensus disorder prediction 204 255 - -
HCH1g0138 408 SUPERFAMILY Thioredoxin-like 12 85 IPR036249 -
HCH1g0138 408 SMART EF1G_2 247 355 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH1g0138 408 CDD GST_N_EF1Bgamma 8 79 - -
HCH1g0138 408 MobiDBLite consensus disorder prediction 213 248 - -
HCH1g0138 408 Pfam Glutathione S-transferase, C-terminal domain 126 188 IPR004046 -
HCH1g0138 408 Gene3D Glutaredoxin 2 76 - -
HCH1g0138 408 Pfam Glutathione S-transferase, N-terminal domain 15 78 IPR004045 -
HCH1g0138 408 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 408 IPR044628 GO:0004364(InterPro)
HCH1g0138 408 FunFam Elongation factor 1-gamma 1 248 408 - -
HCH1g0138 408 SFLD Glutathione Transferase (cytosolic) 15 181 IPR040079 -
HCH1g0138 408 FunFam Elongation factor 1 gamma 83 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1554 HCH-Chr12:42179859 HCH1g0138 HCH-Chr1:10461383 2.70E-183 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0138 K03233 - vvi:100264325 650.203