Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0159 ATGTCTTTTGCAGCAGCCTCAAATCATCCCTCCACTGGACCCCATTCAGGGCTTCCTTCTGATGCTCTATACAGGGAATTATGGCATGCCTGTGCAGGACCGCTTGTCACCCTTCCTCGCCAAGACGAGCGAGTGTACTACTTTCCACAGGGTCACATGGAACAGCTTGAAGCGTCAATGCATCAAGGATTAGAGCAACAGATGCCATCGTTCAATCTACCGTCAAAAATACTTTGTAAAGTTGTCAATGTTCATCTTCGGGCGGAACCTGACACCGATGAAGTTTACGCTCAGATAACTCTGCTACCTGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCCGTCCTTCCTGAGCCTACTAGATGCAATGTTCACTCGTTTTGCAAGACGCTTACGGCTTCTGACACTAGTACTCATGGTGGCTTTTCTGTTCTTCGGAGGCATGCAGATGACTGTTTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGAAATCAGTGGCATTTTAGGCACATTTTCCGAGGCCAACCAAGGCGGCATTTACTAACAACTGGGTGGAGTGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGACGCTTTTATATTTCTAAGAGGTGAAAGCGGAGAGCTTCGTGTTGGGGTGAGGAGGCTCATGAGACAGCTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGCATGCATCTTGGGGTTCTTGCTACTGCATCTCATGCTATTACAACTGGAACACTCTTTTCTGTTTTTTACAAGCCAAGAACAAGCAGGTCTACTTTTCTTGTTAGTTTAAACAAGCACCTTGAAGCTCAAAACCATAAGCTTTCTGTTGGGATGAGGTTCAAGATGAGATTTGAGGGCGAGGAAGTGCCTGAAAGAAGTTTCAGTGGCACAATTGTTGGTGTTGGAGATAATTCGTCACCTGGATGGACTAATTCTGACTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAGGGTATCTCCGTGGGAACTGGAGCCACTTGTGGCATCTAATTCTCTAAGCTCTCAACCTGTGCAGAGGAACAAGCGTCCGAGGCCAACTGTTTTACCTGCACCTTCGCCTGATGCAGCTGTACTTGGTGGGTGGAAATCTACGGTTGAATCTTCTGCCTTTTCATATACTGAGCCACAGCGTGGAAGGGATCTATATTCATCGCCTAAGTTTAGTACCGCTGCTACTTCAAATTCAATTGGTTTTAATGGAAATGGCTCTCTTGGTGCCGTGTCCAGCAATTGTACCTATTGGTCCAATTCCAATAGAGTGGAAAATGTTACGGATACCTCTTCACATGCAGCTAACAGAGAGCCCATTGAAAAGAAACAGGCCACTAGGAATGGCTGCATGCTCTTTGGAATCCAGCTTCTAGGAAATTCCAATTTAGAGGAAGCTTCACCAGTTTCAACGCCCAAAATGGTGGGTGAGGATAGACTGATTCCACCTGTAGATACTGAATTTGACCAGCATTCCGAACCATCAAATGTTCATCGATCCGATATTCCTTCAGTAAGCTGTGATGCTGAGAAATCATGCCTGATTTCTCCTCTAGAGTCTCAAAGCAGGCAAATCCGCAGCTGCACAAAGGTTCATATGCAAGGGATTGCTGTTGGGAGGGCTGTAGATTTGACACGATTCAATCAATATGATGAATTACTTAAGAAACTGGAGGAGATGTTTGACATTGAGGGTGAGCTTTGTGGATCTGTCAAGAAATGGCAGGTTGTTTACACGGACGATGAGGATGATATGATGATGGTTGGGGACGATCCTTGGAATGAGTTCTGCAGCATGGTGAGGAAGATATTCATCTACACAACAGAAGAAGTGAAGAGACTATCGCCAAAGATAAAACTCCCACTCGGTGGAGAGACCAAATCTAGCAAGCCAGATTCTGATACAGTTGCCAACCACACCGAGGATCAATCATCCATCGTAGGATCAGATTGCTGA 2043 45.42 MSFAAASNHPSTGPHSGLPSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVHLRAEPDTDEVYAQITLLPESNQSEVTSPDPVLPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGESGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAITTGTLFSVFYKPRTSRSTFLVSLNKHLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGVGDNSSPGWTNSDWRSLKVQWDEPSSILRPDRVSPWELEPLVASNSLSSQPVQRNKRPRPTVLPAPSPDAAVLGGWKSTVESSAFSYTEPQRGRDLYSSPKFSTAATSNSIGFNGNGSLGAVSSNCTYWSNSNRVENVTDTSSHAANREPIEKKQATRNGCMLFGIQLLGNSNLEEASPVSTPKMVGEDRLIPPVDTEFDQHSEPSNVHRSDIPSVSCDAEKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDELLKKLEEMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKSSKPDSDTVANHTEDQSSIVGSDC 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12427444 12434017 - evm.model.ptg000006l.1129 HCH1g0159 538178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0159 680 FunFam Auxin response factor 126 230 - -
HCH1g0159 680 Pfam AUX/IAA family 553 646 IPR033389 -
HCH1g0159 680 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH1g0159 680 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
HCH1g0159 680 MobiDBLite consensus disorder prediction 649 680 - -
HCH1g0159 680 Gene3D - 125 230 IPR015300 -
HCH1g0159 680 ProSiteProfiles PB1 domain profile. 555 648 IPR053793 -
HCH1g0159 680 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
HCH1g0159 680 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
HCH1g0159 680 MobiDBLite consensus disorder prediction 365 387 - -
HCH1g0159 680 FunFam Auxin response factor 550 644 - -
HCH1g0159 680 SUPERFAMILY DNA-binding pseudobarrel domain 116 257 IPR015300 -
HCH1g0159 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 645 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH1g0159 680 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
HCH1g0159 680 Gene3D - 291 365 - -
HCH1g0159 680 FunFam Auxin response factor 291 363 - -
HCH1g0159 680 Gene3D - 550 644 - -
HCH1g0159 680 SUPERFAMILY CAD & PB1 domains 557 632 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1544 HCH-Chr12:41949012 HCH1g0159 HCH-Chr1:12427444 0.00E+00 dispersed
HCH1g0159 HCH-Chr1:12427444 HCH8g1520 HCH-Chr8:49320730 1.50E-175 dispersed
HCH1g0159 HCH-Chr1:12427444 HCH14g1100 HCH-Chr14:37927991 1.60E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33031 PF02309 AUX_IAA 7.00E-12 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0159 K14486 - csv:101204612 1271.14