Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0167 | ATGGATGAAAACGGTGGCAGCGTTGTTAAATTGACTGGAATCCGTCAGATTGTAAGGCTGAAGGAAATTCTTCAAAATTGGCAATCTGTCACGGTTGGATCCTCCAAACCCAACAATCAAAATCAAAACACCCTTTCACCCGCAATCAACAAAAGACTCAGCAATGTCTTGACTTGTGATTCCGATGAAGATACCTGCCACAGCCCTGAACCTCCCTCTGATGTCCCTAAAGGCTACTTGGCTGTTTACGTCGGTCACGAACTTCGCAGGTTTATCATTCCGACCACCTATCTCAGCCATTCCGTCTTCAAGGTCTTATTGGAAAAGGCCGAGGAGGAGTTCGGATTCGATCATACCGGTGGCCTTACATTTCCATGCGAGATTGAGACCTTCAAATACCTCCTCAAGTGCATGGACAACAAGGATCTTCCTGACCACAGTCCAGCTCAAACTTCTGTAAGCATCCAAGACTGA | 474 | 46.41 | MDENGGSVVKLTGIRQIVRLKEILQNWQSVTVGSSKPNNQNQNTLSPAINKRLSNVLTCDSDEDTCHSPEPPSDVPKGYLAVYVGHELRRFIIPTTYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMDNKDLPDHSPAQTSVSIQD | 157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13112661 | 13113212 | + | evm.model.ptg000006l.1121 | HCH1g0167 | 538186 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0167 | 157 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 20 | 138 | IPR003676 | GO:0009733(InterPro) | |
| HCH1g0167 | 157 | Pfam | Auxin responsive protein | 19 | 137 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0426 | HCH-Chr11:4185857 | HCH1g0167 | HCH-Chr1:13112661 | 3.80E-16 | dispersed | |
| HCH1g0167 | HCH-Chr1:13112661 | HCH2g0509 | HCH-Chr2:48786672 | 8.20E-16 | dispersed | |
| HCH12g0282 | HCH-Chr12:1579828 | HCH1g0167 | HCH-Chr1:13112661 | 1.10E-18 | transposed | |
| HCH4g1590 | HCH-Chr4:12602583 | HCH1g0167 | HCH-Chr1:13112661 | 3.20E-20 | transposed | |
| HCH1g0167 | HCH-Chr1:13112661 | HCH11g0604 | HCH-Chr11:13517730 | 4.40E-09 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH1g0167 | K14488 | - | csv:101207913 | 224.942 |