Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0171 ATGGCATTTCAAGATTTTGATCAAATATCCGAACGCGTGAGAGTTGAGAGAGAACGTAAATTCAGAAAGAGGATCATCATTGGTTCTGTTTCATCATTCCTCCTCCTCCTCCTTATTGTCGCCGGAGTCTTCTCTCAAGTCTCTAAATCTAGCATTGGTGCCAATAATAACAATACCAACAATCCTAAACCTGGAGGTTCTACTGCAGTTCCTAAAGATGTATCTCGGGTTTCGAAACTAATCGCCATGATTTGTAATTCTACAGATTATAAAGGCAAGTGTGAGAGCACTCTTAAGGATGCAGTTGAAACCAACCCTCAATCATCCCAACCTAAAGATCTTCTCAAGTTAGCCATGTCAGCTGCTATTGATGAGGTTAAAAAAGCAATCAACAAAACAAATGATTTCAAATTTGATATCCCTGAAGACAAAGCTGCATTTGAAGATTGTAAGGAACTGTTTCGAGATGGTTTGGAAGAATTAGAGGAATCTGTTTCTCAAGTTAAAAATAATGAATTAGGAAAGCTCAAAATCCATGATCTTAACAATTGGCTCAGTGCTTCAATGTCTTACCATGAAACGTGCATTGATGGATTTCCAAAAGGAAAAGTAAGATCTGATATGGAGAAAGCCTTGAAGGCTGCTAAGGAACTTACCAGCAATTGTCTCGCAATGATTTCTGAAGTGGCTTCTTTCTTTTCAACATTCCAAGTTCAATCTGGTTCTGGTTCGGGTTCGGGGCGTAACCTTCTAGCCAATGATGGGCTTCCAATCTGGATGAACCATGAACATAAAAGAATGTTGAAGGCAGGAGGTGAAAAAGAAAAACCTAAGCCTAATGTTATAGTTGCAAAGGATGCTAGTGGAAACTTCAAAACTATTTCAGAAGCTTTGAATGCCATGCCTGCAACATATCAAGGACGGTATGTTATCTACGTTAAGGAAGGGATATACGAGGAGACGGTCTTAATTACGAAAAAGATGGTAAACGTTACAATGTACGGAGATGGATCTCGAAAGAGTATAATTAGTGGGAGCAAGAATTTCGTGGATGGAGTTAGAACTTTCCAAACTGCAACATTTGCTGCAGTTGGAGAAGGTTTCATGGCCCAAGGCATGGGATTCAGAAACACAGCAGGAGCAGAAAAACATCAAGCCGTAGCAGCGAGAGTTCAAGCAGACGGTTCGATATTCCTCAACTGTCGATTCGAGGGATATCAAGACACTCTATACGTTCAAACACATCGTCAGTTTTACAGAAGTTGTGTGATAGTTGGTACTATTGATTTCATATTTGGAGATGCAACTGCAATATTTCAAAACTGCATGATCATGATAAGGAAACCATTAGAGAATCAACAAAATATAGTTACAGCACAAGGAAGAATCGATAGACATGAGACTACTGGAATAGTACTTCAAAACTGTAAAATTTTGGCGGATGAGAGTTTAAAGCCAGTGAAAGCTCAGTTTAAGAGTTACTTAGGGAGGCCATGGAAAGAGTTCTCAAGAACAATCGTAATGGAATCTGATATTGAAGATATAATTCATCCAGATGGATGGTTACCATGGGAAGGAGATTTTGCACTCAAGACTTTGTATTACGCAGAGTTTAATAATAAAGGAGGAGGTGCAAAGATTAATGCTAGAGTTAAGTGGCCAGGCTACAAGGTCATTAATAAGGAAGAGGCCACCAAGTTCACTATTGGATCTTTTCTAGAGCTTAATTGGATCGAGACCAAGTCCGTTCCTGTTCATCTCGGCCTTTTTTAA 1773 39.31 MAFQDFDQISERVRVERERKFRKRIIIGSVSSFLLLLLIVAGVFSQVSKSSIGANNNNTNNPKPGGSTAVPKDVSRVSKLIAMICNSTDYKGKCESTLKDAVETNPQSSQPKDLLKLAMSAAIDEVKKAINKTNDFKFDIPEDKAAFEDCKELFRDGLEELEESVSQVKNNELGKLKIHDLNNWLSASMSYHETCIDGFPKGKVRSDMEKALKAAKELTSNCLAMISEVASFFSTFQVQSGSGSGSGRNLLANDGLPIWMNHEHKRMLKAGGEKEKPKPNVIVAKDASGNFKTISEALNAMPATYQGRYVIYVKEGIYEETVLITKKMVNVTMYGDGSRKSIISGSKNFVDGVRTFQTATFAAVGEGFMAQGMGFRNTAGAEKHQAVAARVQADGSIFLNCRFEGYQDTLYVQTHRQFYRSCVIVGTIDFIFGDATAIFQNCMIMIRKPLENQQNIVTAQGRIDRHETTGIVLQNCKILADESLKPVKAQFKSYLGRPWKEFSRTIVMESDIEDIIHPDGWLPWEGDFALKTLYYAEFNNKGGGAKINARVKWPGYKVINKEEATKFTIGSFLELNWIETKSVPVHLGLF 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13321601 13323526 - evm.model.ptg000006l.1117 HCH1g0171 538190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0171 590 NCBIfam pectinesterase inhibitor domain 78 228 IPR006501 GO:0004857(InterPro)
HCH1g0171 590 Pfam Plant invertase/pectin methylesterase inhibitor 79 225 IPR006501 GO:0004857(InterPro)
HCH1g0171 590 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
HCH1g0171 590 CDD PMEI-like_3 84 231 - -
HCH1g0171 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 229 IPR035513 -
HCH1g0171 590 Gene3D - 274 589 IPR012334 -
HCH1g0171 590 SUPERFAMILY Pectin lyase-like 277 577 IPR011050 -
HCH1g0171 590 FunFam Pectinesterase 274 589 - -
HCH1g0171 590 FunFam Pectinesterase 77 230 - -
HCH1g0171 590 Coils Coil 151 171 - -
HCH1g0171 590 Pfam Pectinesterase 280 574 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH1g0171 590 PANTHER PECTINESTERASE 24 579 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH1g0171 590 SMART PMEI_2 76 225 IPR006501 GO:0004857(InterPro)
HCH1g0171 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 228 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0171 HCH-Chr1:13321601 HCH6g1710 HCH-Chr6:49794629 1.20E-136 dispersed
HCH1g0171 HCH-Chr1:13321601 HCH1g0172 HCH-Chr1:13467443 9.40E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0171 - - - 0.0